CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89318
CDX90262
CDX94304
CDX97358
CDY12068
CDY15876
CDY26774
CDY28290
CDY44519
CDY52543
CDY59109
CDY59110
CDY59111
CDY59763
CDY70933
CDY71694
CDY72366

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16950.1	CDY15876	AT2G21660.1	14756317
AT2G16950.1	CDY59763	AT2G21660.1	14756317
AT2G16950.1	CDY70933	AT2G21660.1	14756317
AT2G16950.1	CDY72366	AT2G21660.1	14756317
AT2G16950.1	CDX90262	AT4G14300.1	14756317
AT2G16950.1	CDY12068	AT4G14300.1	14756317
AT2G16950.1	CDX89318	AT4G26630.1	25387881
AT2G16950.1	CDX94304	AT4G26630.1	25387881
AT2G16950.1	CDX97358	AT4G26630.1	25387881
AT2G16950.1	CDY26774	AT5G27080.1	20706207
AT2G16950.1	CDY28290	AT5G27080.1	20706207
AT2G16950.1	CDY44519	AT5G27080.1	20706207
AT2G16950.1	CDY52543	AT5G27080.1	20706207
AT2G16950.1	CDY59109	AT5G27080.1	20706207
AT2G16950.1	CDY59110	AT5G27080.1	20706207
AT2G16950.1	CDY59111	AT5G27080.1	20706207
AT2G16950.1	CDY71694	AT5G27080.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G16953.1	Thale cress	cytosol	10.17	18.75
GSMUA_Achr4P16360_001	Banana	cytosol	65.25	14.61
CDY47482	Canola	cytosol	93.22	12.46
CDX89768	Canola	cytosol	85.59	11.54
CDY31391	Canola	cytosol	85.59	11.45
AT2G16950.1	Thale cress	cytosol	84.75	11.17
CDY02225	Canola	cytosol	83.05	11.11
Os04t0691500-01	Rice	cytosol, plasma membrane	66.95	10.29
VIT_03s0038g02830.t01	Wine grape	cytosol	74.58	9.82
Solyc01g111780.2.1	Tomato	nucleus, plastid	73.73	9.78
KRH36099	Soybean	cytosol	71.19	9.41
KRG90653	Soybean	cytosol	71.19	9.38
HORVU2Hr1G126610.7	Barley	cytosol	68.64	9.16
EES11709	Sorghum	cytosol	66.95	8.89
Zm00001d002936_P010	Maize	cytosol	66.95	8.87
TraesCS2D01G572700.1	Wheat	cytosol	66.95	8.81
TraesCS2B01G624100.1	Wheat	cytosol	66.95	8.81
TraesCS2A01G562500.1	Wheat	golgi	66.95	8.81
Zm00001d026696_P005	Maize	cytosol	66.1	8.76
CDY54431	Canola	cytosol	85.59	8.45
TraesCS2B01G426000.1	Wheat	cytosol	19.49	6.32
TraesCS3A01G329100.1	Wheat	cytosol, mitochondrion	33.05	3.98
CDY26791	Canola	cytosol	3.39	3.12
CDX99262	Canola	cytosol	11.02	2.84
CDY35657	Canola	cytosol	14.41	1.96
CDY14379	Canola	cytosol	13.56	1.84
CDY44668	Canola	cytosol	13.56	1.83
CDY53085	Canola	cytosol	13.56	1.83
Os04t0691600-02	Rice	plastid	0.85	0.69
Bra010184.1-P	Field mustard	cytosol, mitochondrion	1.69	0.66
CDY28068	Canola	cytosol	0.85	0.21
CDY71774	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY26790	EnsemblPlantsGene:GSBRNA2T00035725001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:HEAT	InterPro:IPR011989	PANTHER:PTHR10527	PANTHER:PTHR10527:SF3
PFAM:PF02985	ProteinID:CDY26790	ProteinID:CDY26790.1	SEG:seg	SUPFAM:SSF48371	UniParc:UPI0004EDF3C1
UniProt:A0A078GJS4	MapMan:23.5.1.2.2	:	:	:	:

Description

BnaC09g09170DBnaC09g09170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GJS4]

Coordinates

chrLK032194:+:246976..247972

Molecular Weight (calculated)

12627.3 Da

IEP (calculated)

4.183

GRAVY (calculated)

0.229

Length

118 amino acids

Sequence
(BLAST)

001: MDIIQLQHMA KVDPASAGAQ YDREFIVCSL DLLSGLAEGL GSGIESLVSQ TNLRDLLLNC CMDEAPDVRQ SAFALMGDLA RSTNLIGENL SVANNACWAI
101: GELAVKCLVK GRLVNDMN

Best Arabidopsis Sequence Match ( AT2G16950.1 )
(BLAST)

001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAVIWQAL YNSLDKYLQG LFVLANDPVP EVRKLVCAAF VHLTEVLPSS IEPHLRNVME YMLQVNRDPD EEVSLEACEF WSAYCDAQLP
301: PENLKEFLPR LIPVLLENMA YADDDESLLD AEEDESQPDR DQDLKPRFHT SRLHGSEDFD DDDDDSFNVW NLRKCSAAAI DVLSNVFGDE ILPALMPLIQ
401: KNLSASGDEA WKQREAAVLA LGAIAEGCMN GLYPHLSEIV AFLLPLLDDK FPLIRSISCW TLSRFGKYLI QESGNPKGYE QFEKVLMGLL RRLLDTNKRV
501: QEAACSAFAT VEEDAAEELV PHLGVILQHL MCAFGKYQRR NLRIVYDAIG TLADSVREEL NKPAYLEILM PPLVAKWQQL SNSDKDLFPL LECFTSISQA
601: LGVGFAPFAQ PVFQRCMDII QLQQLAKVNP ASAGAQYDRE FIVCSLDLLS GLAEGLGSGI ESLVQQSNLR DLLLNCCIDE AADVRQSAFA LMGDLARVFP
701: VYLQPRLLDF LEIASQQLSA NLNRENLSVA NNACWAIGEL AVKVRQEVSP IVAKVVSSLG LILQHGEGVN KALVENSAIT LGRLAWIRPD LVAPHMDHFM
801: KPWCMALSMV RDDIEKEDAF RGLCAVVKVN PSGGVSSLVF ICQAIASWHE IRSEDVQTEV SQVLNGYKHM LGNSWAECLS ALDPPVKERL ARYQV

Arabidopsis Description

TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.