Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26791 | Canola | cytosol | 12.96 | 90.62 |
| CDY26790 | Canola | cytosol | 11.17 | 84.75 |
| KRH36099 | Soybean | cytosol | 75.75 | 75.92 |
| KRG90653 | Soybean | cytosol | 75.64 | 75.56 |
| VIT_03s0038g02830.t01 | Wine grape | cytosol | 75.53 | 75.45 |
| Solyc01g111780.2.1 | Tomato | nucleus, plastid | 73.63 | 74.04 |
| HORVU2Hr1G126610.7 | Barley | cytosol | 69.61 | 70.48 |
| Os04t0691500-01 | Rice | cytosol, plasma membrane | 60.45 | 70.44 |
| AT2G16953.1 | Thale cress | cytosol | 5.03 | 70.31 |
| EES11709 | Sorghum | cytosol | 69.83 | 70.3 |
| Zm00001d002936_P010 | Maize | cytosol | 69.94 | 70.26 |
| TraesCS2D01G572700.1 | Wheat | cytosol | 70.06 | 69.9 |
| TraesCS2B01G624100.1 | Wheat | cytosol | 70.06 | 69.9 |
| TraesCS2A01G562500.1 | Wheat | golgi | 70.06 | 69.9 |
| Zm00001d026696_P005 | Maize | cytosol | 68.94 | 69.33 |
| GSMUA_Achr4P16360_001 | Banana | cytosol | 40.34 | 68.5 |
| AT2G16960.1 | Thale cress | cytosol | 38.66 | 62.68 |
| Bra010184.1-P | Field mustard | cytosol, mitochondrion | 19.55 | 57.38 |
| TraesCS2B01G426000.1 | Wheat | cytosol | 16.09 | 39.56 |
| TraesCS3A01G329100.1 | Wheat | cytosol, mitochondrion | 35.98 | 32.82 |
| AT5G53480.1 | Thale cress | cytosol | 18.55 | 19.08 |
| AT3G08947.1 | Thale cress | cytosol | 13.74 | 18.72 |
| Os04t0691600-02 | Rice | plastid | 1.23 | 7.59 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:23.5.1.2.2 | EntrezGene:816198 | ProteinID:AEC06561.1 | InterPro:ARM-like | InterPro:ARM-type_fold |
| ArrayExpress:AT2G16950 | EnsemblPlantsGene:AT2G16950 | RefSeq:AT2G16950 | TAIR:AT2G16950 | RefSeq:AT2G16950-TAIR-G | EnsemblPlants:AT2G16950.1 |
| TAIR:AT2G16950.1 | Unigene:At.40215 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0008536 | InterPro:IPR001494 | InterPro:IPR011989 | InterPro:Importin-beta_N |
| RefSeq:NP_179287.3 | PFAM:PF03810 | PFAM:PF13513 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50166 | PANTHER:PTHR10527 | PANTHER:PTHR10527:SF3 | SMART:SM00913 | SUPFAM:SSF48371 |
| Symbol:TRN1 | UniParc:UPI00005DC2B6 | SEG:seg | : | : | : |
Description
TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
Coordinates
chr2:+:7353847..7361202
Molecular Weight (calculated)
99641.0 Da
IEP (calculated)
4.557
GRAVY (calculated)
0.025
Length
895 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAVIWQAL YNSLDKYLQG LFVLANDPVP EVRKLVCAAF VHLTEVLPSS IEPHLRNVME YMLQVNRDPD EEVSLEACEF WSAYCDAQLP
301: PENLKEFLPR LIPVLLENMA YADDDESLLD AEEDESQPDR DQDLKPRFHT SRLHGSEDFD DDDDDSFNVW NLRKCSAAAI DVLSNVFGDE ILPALMPLIQ
401: KNLSASGDEA WKQREAAVLA LGAIAEGCMN GLYPHLSEIV AFLLPLLDDK FPLIRSISCW TLSRFGKYLI QESGNPKGYE QFEKVLMGLL RRLLDTNKRV
501: QEAACSAFAT VEEDAAEELV PHLGVILQHL MCAFGKYQRR NLRIVYDAIG TLADSVREEL NKPAYLEILM PPLVAKWQQL SNSDKDLFPL LECFTSISQA
601: LGVGFAPFAQ PVFQRCMDII QLQQLAKVNP ASAGAQYDRE FIVCSLDLLS GLAEGLGSGI ESLVQQSNLR DLLLNCCIDE AADVRQSAFA LMGDLARVFP
701: VYLQPRLLDF LEIASQQLSA NLNRENLSVA NNACWAIGEL AVKVRQEVSP IVAKVVSSLG LILQHGEGVN KALVENSAIT LGRLAWIRPD LVAPHMDHFM
801: KPWCMALSMV RDDIEKEDAF RGLCAVVKVN PSGGVSSLVF ICQAIASWHE IRSEDVQTEV SQVLNGYKHM LGNSWAECLS ALDPPVKERL ARYQV
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAVIWQAL YNSLDKYLQG LFVLANDPVP EVRKLVCAAF VHLTEVLPSS IEPHLRNVME YMLQVNRDPD EEVSLEACEF WSAYCDAQLP
301: PENLKEFLPR LIPVLLENMA YADDDESLLD AEEDESQPDR DQDLKPRFHT SRLHGSEDFD DDDDDSFNVW NLRKCSAAAI DVLSNVFGDE ILPALMPLIQ
401: KNLSASGDEA WKQREAAVLA LGAIAEGCMN GLYPHLSEIV AFLLPLLDDK FPLIRSISCW TLSRFGKYLI QESGNPKGYE QFEKVLMGLL RRLLDTNKRV
501: QEAACSAFAT VEEDAAEELV PHLGVILQHL MCAFGKYQRR NLRIVYDAIG TLADSVREEL NKPAYLEILM PPLVAKWQQL SNSDKDLFPL LECFTSISQA
601: LGVGFAPFAQ PVFQRCMDII QLQQLAKVNP ASAGAQYDRE FIVCSLDLLS GLAEGLGSGI ESLVQQSNLR DLLLNCCIDE AADVRQSAFA LMGDLARVFP
701: VYLQPRLLDF LEIASQQLSA NLNRENLSVA NNACWAIGEL AVKVRQEVSP IVAKVVSSLG LILQHGEGVN KALVENSAIT LGRLAWIRPD LVAPHMDHFM
801: KPWCMALSMV RDDIEKEDAF RGLCAVVKVN PSGGVSSLVF ICQAIASWHE IRSEDVQTEV SQVLNGYKHM LGNSWAECLS ALDPPVKERL ARYQV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.