Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- cytosol 2
- mitochondrion 2
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26791 | Canola | cytosol | 39.06 | 19.53 |
| CDY26790 | Canola | cytosol | 18.75 | 10.17 |
| GSMUA_Achr4P16360_001 | Banana | cytosol | 54.69 | 6.64 |
| AT2G16960.1 | Thale cress | cytosol | 51.56 | 5.98 |
| AT2G16950.1 | Thale cress | cytosol | 70.31 | 5.03 |
| Zm00001d026696_P005 | Maize | cytosol | 56.25 | 4.04 |
| Zm00001d002936_P010 | Maize | cytosol | 56.25 | 4.04 |
| EES11709 | Sorghum | cytosol | 54.69 | 3.94 |
| KRH36099 | Soybean | cytosol | 54.69 | 3.92 |
| KRG90653 | Soybean | cytosol | 54.69 | 3.91 |
| HORVU2Hr1G126610.7 | Barley | cytosol | 53.12 | 3.85 |
| Solyc01g111780.2.1 | Tomato | nucleus, plastid | 53.12 | 3.82 |
| TraesCS2A01G562500.1 | Wheat | golgi | 53.12 | 3.79 |
| TraesCS2B01G624100.1 | Wheat | cytosol | 53.12 | 3.79 |
| TraesCS2D01G572700.1 | Wheat | cytosol | 53.12 | 3.79 |
| VIT_03s0038g02830.t01 | Wine grape | cytosol | 50.0 | 3.57 |
| TraesCS3A01G329100.1 | Wheat | cytosol, mitochondrion | 46.88 | 3.06 |
| Os04t0691500-01 | Rice | cytosol, plasma membrane | 21.88 | 1.82 |
| AT5G53480.1 | Thale cress | cytosol | 21.88 | 1.61 |
| AT3G08947.1 | Thale cress | cytosol | 15.62 | 1.52 |
| TraesCS2B01G426000.1 | Wheat | cytosol | 3.12 | 0.55 |
| Os04t0691600-02 | Rice | plastid | 0.0 | 0.0 |
| Bra010184.1-P | Field mustard | cytosol, mitochondrion | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:AT2G16953 | EnsemblPlants:AT2G16953.1 | EnsemblPlantsGene:AT2G16953 | EntrezGene:28718281 | Gene3D:1.25.10.10 | InterPro:ARM-like |
| InterPro:IPR011989 | ProteinID:ANM61201.1 | RefSeq:NP_001323431.1 | UniParc:UPI0008483E46 | UniProt:A0A1P8AX06 | MapMan:35.1 |
Description
Transportin (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A1P8AX06]
Coordinates
chr2:+:7361336..7362157
Molecular Weight (calculated)
6757.3 Da
IEP (calculated)
8.510
GRAVY (calculated)
0.252
Length
64 amino acids
Sequence
(BLAST)
(BLAST)
1: SANITKGNLD VTTNACEAIG ELAVKGVNNA LVENSAITLG RLALIRPDLV APYMKPWSMA LSMK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.