CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 10
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 21766870
extracellular: 25724908
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03482	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	93.7	94.62
Solyc09g091070.1.1	Tomato	nucleus	63.92	88.59
Os08t0434300-01	Rice	plastid	69.01	80.06
PGSC0003DMT400030247	Potato	plastid	79.42	79.61
PGSC0003DMT400065411	Potato	plastid	79.42	79.61
VIT_17s0000g06270.t01	Wine grape	plastid	79.18	79.18
PGSC0003DMT400050235	Potato	plastid	78.45	78.64
Solyc03g115990.1.1	Tomato	plastid	77.97	78.16
CDY61271	Canola	plastid	74.58	77.0
VIT_14s0108g00870.t01	Wine grape	plastid	79.42	76.64
AT3G47520.1	Thale cress	plastid	74.58	76.43
CDY21789	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	29.3	76.1
Bra019504.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	29.3	76.1
Bra018137.1-P	Field mustard	plastid	73.85	75.87
TraesCS1A01G348500.1	Wheat	plastid	72.88	75.63
Os01t0829800-01	Rice	plastid	72.4	75.51
TraesCS1B01G363100.1	Wheat	plastid	72.16	74.87
TraesCS1D01G351500.1	Wheat	golgi, plastid	72.16	74.87
Zm00001d050409_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	71.67	74.56
TraesCS7B01G289400.1	Wheat	plastid	70.94	74.37
HORVU1Hr1G081550.1	Barley	plastid	71.67	74.19
OQU80513	Sorghum	plastid	70.7	74.11
TraesCS7A01G386600.1	Wheat	plastid	70.7	74.11
GSMUA_Achr7P11540_001	Banana	plastid	74.58	74.04
GSMUA_Achr6P02650_001	Banana	plastid	74.58	74.04
GSMUA_Achr5P23320_001	Banana	peroxisome	56.17	73.89
Zm00001d032187_P001	Maize	plastid	69.25	72.59
TraesCS7D01G383100.1	Wheat	plastid, vacuole	70.7	70.36
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	61.99	68.45
CDY47402	Canola	plastid	74.09	65.11
HORVU7Hr1G091760.2	Barley	mitochondrion	71.91	64.01
KRH28298	Soybean	endoplasmic reticulum, nucleus	52.06	60.91
KRH26205	Soybean	mitochondrion	50.61	60.58
KRH55117	Soybean	mitochondrion	50.12	60.0
KRH77189	Soybean	endoplasmic reticulum	40.92	58.48
KRH49884	Soybean	endoplasmic reticulum, nucleus	49.64	57.58
KRH42019	Soybean	nucleus	49.64	57.58
KRH48807	Soybean	mitochondrion	20.34	56.76
CDX77861	Canola	plastid	32.2	46.5
AT3G53910.1	Thale cress	cytosol	11.62	44.44

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	EntrezGene:100783173	MapMan:23.1.3.4.3	Gene3D:3.40.50.720	Gene3D:3.90.110.10	EMBL:ACUP02002800
EnsemblPlantsGene:GLYMA_05G026300	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099
GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615
GO:GO:0016616	GO:GO:0030060	GO:GO:0055114	UniProt:I1JZP0	InterPro:IPR015955	EnsemblPlants:KRH56907
ProteinID:KRH56907	ProteinID:KRH56907.1	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS
InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	ScanProsite:PS00068	PANTHER:PTHR11540
PANTHER:PTHR11540:SF46	MetaCyc:PWY-1622	MetaCyc:PWY-5392	MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-5913
MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7115	MetaCyc:PWY-7383	SUPFAM:SSF51735	SUPFAM:SSF56327
TIGRFAMs:TIGR01772	UniParc:UPI000233A861	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:2284668..2286730

Molecular Weight (calculated)

43651.2 Da

IEP (calculated)

6.918

GRAVY (calculated)

0.008

Length

413 amino acids

Sequence
(BLAST)

001: MAAAPAATFT IGTTGSLGQR GNSLPQLKSS GLKFNSQNHL KSFCGLKAMS SVRCESESSF LVNKTGAALR ASFASKAQKE NDQNFNYNSQ PQASYKVAVL
101: GAAGGIGQPL ALLIKMSPLV SDLHLYDIAN VKGVAADISH CNTPSQVRDF TGASELANCL KDVNVVVIPA GVPRKPGMTR DDLFNINAGI VRDLVSAVAD
201: NSPDAFIQII SNPVNSTVPI AAEVLKQKGV YDPKKLFGVT TLDVVRANTF VAQRKNLKLI DVDVPVVGGH AGITILPLLS KTRPSASFTD EEIEELTVRI
301: QNAGTEVVEA KAGAGSATLS MAYAAARFVE SSLRALDGDG DVYECSYVES DLTDLPFFAS RVKLGRKGVE ALIPSDLQGL TDYEQKALES LKPELMASIE
401: KGIAFAQKQA VAA

Best Arabidopsis Sequence Match ( AT3G47520.1 )
(BLAST)

001: MATATSASLF STVSSSYSKA SSIPHSRLQS VKFNSVPSFT GLKSTSLISG SDSSSLAKTL RGSVTKAQTS DKKPYGFKIN ASYKVAVLGA AGGIGQPLSL
101: LIKMSPLVST LHLYDIANVK GVAADLSHCN TPSQVRDFTG PSELADCLKD VNVVVIPAGV PRKPGMTRDD LFNINANIVK TLVEAVAENC PNAFIHIISN
201: PVNSTVPIAA EVLKKKGVYD PKKLFGVTTL DVVRANTFVS QKKNLKLIDV DVPVIGGHAG ITILPLLSKT KPSVNFTDEE IQELTVRIQN AGTEVVDAKA
301: GAGSATLSMA YAAARFVESS LRALDGDGDV YECSFVESTL TDLPFFASRV KIGKNGLEAV IESDLQGLTE YEQKALEALK VELKASIDKG VAFANKPAAA
401: AAN

Arabidopsis Description

MDHMalate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.