Factsheet for GSMUA_Achr5P23320_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 2
plastid 2
peroxisome 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	mitochondrion, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g091070.1.1	Tomato	nucleus	75.8	79.87
Os08t0434300-01	Rice	plastid	74.2	65.45
Bra019504.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	31.53	62.26
CDY21789	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	31.53	62.26
GSMUA_Achr6P02650_001	Banana	plastid	79.3	59.86
Os01t0829800-01	Rice	plastid	74.84	59.34
Zm00001d050409_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	74.2	58.69
TraesCS7A01G386600.1	Wheat	plastid	73.57	58.63
HORVU1Hr1G081550.1	Barley	plastid	73.89	58.15
OQU80513	Sorghum	plastid	72.93	58.12
TraesCS7B01G289400.1	Wheat	plastid	72.93	58.12
TraesCS1A01G348500.1	Wheat	plastid	73.57	58.04
TraesCS1B01G363100.1	Wheat	plastid	73.57	58.04
TraesCS1D01G351500.1	Wheat	golgi, plastid	73.57	58.04
VIT_17s0000g06270.t01	Wine grape	plastid	76.11	57.87
Zm00001d032187_P001	Maize	plastid	72.61	57.87
AT3G47520.1	Thale cress	plastid	73.89	57.57
CDY61271	Canola	plastid	73.25	57.5
PGSC0003DMT400065411	Potato	plastid	75.16	57.28
PGSC0003DMT400030247	Potato	plastid	75.16	57.28
Bra018137.1-P	Field mustard	plastid	72.93	56.97
Solyc03g115990.1.1	Tomato	plastid	73.89	56.31
PGSC0003DMT400050235	Potato	plastid	73.89	56.31
GSMUA_Achr7P11540_001	Banana	plastid	74.52	56.25
KRH56907	Soybean	endoplasmic reticulum	73.89	56.17
TraesCS7D01G383100.1	Wheat	plastid, vacuole	73.57	55.66
KRH03482	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	72.29	55.5
VIT_14s0108g00870.t01	Wine grape	plastid	73.89	54.21
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	59.87	50.27
HORVU7Hr1G091760.2	Barley	mitochondrion	74.2	50.22
CDY47402	Canola	plastid	73.89	49.36
GSMUA_Achr4P08580_001	Banana	mitochondrion	51.91	46.97
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	51.91	46.84
GSMUA_Achr5P02000_001	Banana	unclear	52.87	46.63
GSMUA_Achr4P01380_001	Banana	plasma membrane	52.23	46.07
CDX77861	Canola	plastid	39.81	43.71
CDX98040	Canola	cytosol	22.29	41.92
AT3G53910.1	Thale cress	cytosol	14.33	41.67
CDY19424	Canola	cytosol	21.02	38.82
Bra019790.1-P	Field mustard	plastid	36.31	29.16

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016615
GO:GO:0016616	GO:GO:0030060	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr5G23320_001	EnsemblPlants:GSMUA_Achr5P23320_001	EnsemblPlants:GSMUA_Achr5T23320_001
InterPro:IPR015955	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	UniProt:M0T107	InterPro:Malate_DH_AS
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF46
SUPFAM:SSF51735	SUPFAM:SSF56327	TMHMM:TMhelix	UniParc:UPI0002960901	:	:

Description

Malate dehydrogenase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr5G23320_001]

Coordinates

chr5:+:25077110..25078323

Molecular Weight (calculated)

33823.7 Da

IEP (calculated)

5.190

GRAVY (calculated)

0.198

Length

314 amino acids

Sequence
(BLAST)

001: MSPLVSALHL YDIANVKGVA ADLSHCNSPA QVLDFTGQSE LAKCLKGVDV VVIPAGVPRK PGMTRDDLFN INAGIVKTLI EAVADNCPDA FIHIISNPVN
101: STVPIAAEVL KQKGVYDPKK LFGVTTLDVV RANTFVAQKK NLKLTRPSTT FADDEVEELT LRIQNAGTEV VEAKAGAGSA TLSMAYAAAR FVEASLHALD
201: SDGDVYECSF VESDLTELPF FASRVKIGKK GIEAIVSSDL QGLTEYETNA LEALKPELQA SIEKGMAFVH KQARELSNDQ GRTVLSATAL GIFLIHQLIL
301: FSCLVFFWLF SHVV

Best Arabidopsis Sequence Match ( AT3G47520.1 )
(BLAST)

001: MATATSASLF STVSSSYSKA SSIPHSRLQS VKFNSVPSFT GLKSTSLISG SDSSSLAKTL RGSVTKAQTS DKKPYGFKIN ASYKVAVLGA AGGIGQPLSL
101: LIKMSPLVST LHLYDIANVK GVAADLSHCN TPSQVRDFTG PSELADCLKD VNVVVIPAGV PRKPGMTRDD LFNINANIVK TLVEAVAENC PNAFIHIISN
201: PVNSTVPIAA EVLKKKGVYD PKKLFGVTTL DVVRANTFVS QKKNLKLIDV DVPVIGGHAG ITILPLLSKT KPSVNFTDEE IQELTVRIQN AGTEVVDAKA
301: GAGSATLSMA YAAARFVESS LRALDGDGDV YECSFVESTL TDLPFFASRV KIGKNGLEAV IESDLQGLTE YEQKALEALK VELKASIDKG VAFANKPAAA
401: AAN

Arabidopsis Description

MDHMalate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.