Factsheet for Bra018137.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61271	Canola	plastid	98.01	98.5
Solyc09g091070.1.1	Tomato	nucleus	62.94	84.9
Bra019504.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	31.59	79.87
Os08t0434300-01	Rice	plastid	69.65	78.65
KRH03482	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	75.87	74.57
KRH56907	Soybean	endoplasmic reticulum	75.87	73.85
GSMUA_Achr5P23320_001	Banana	peroxisome	56.97	72.93
VIT_17s0000g06270.t01	Wine grape	plastid	74.88	72.88
Zm00001d050409_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	71.89	72.8
TraesCS7B01G289400.1	Wheat	plastid	71.14	72.59
Solyc03g115990.1.1	Tomato	plastid	74.38	72.57
PGSC0003DMT400050235	Potato	plastid	74.38	72.57
PGSC0003DMT400065411	Potato	plastid	73.63	71.84
PGSC0003DMT400030247	Potato	plastid	73.63	71.84
OQU80513	Sorghum	plastid	70.4	71.83
TraesCS7A01G386600.1	Wheat	plastid	70.4	71.83
Os01t0829800-01	Rice	plastid	70.4	71.46
TraesCS1D01G351500.1	Wheat	golgi, plastid	70.65	71.36
TraesCS1A01G348500.1	Wheat	plastid	70.65	71.36
TraesCS1B01G363100.1	Wheat	plastid	70.4	71.11
HORVU1Hr1G081550.1	Barley	plastid	70.4	70.93
Zm00001d032187_P001	Maize	plastid	69.15	70.56
VIT_14s0108g00870.t01	Wine grape	plastid	74.38	69.86
GSMUA_Achr6P02650_001	Banana	plastid	72.14	69.71
GSMUA_Achr7P11540_001	Banana	plastid	71.89	69.47
TraesCS7D01G383100.1	Wheat	plastid, vacuole	70.9	68.67
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	58.21	62.57
HORVU7Hr1G091760.2	Barley	mitochondrion	70.65	61.21
Bra038112.1-P	Field mustard	mitochondrion	46.52	59.94
Bra030951.1-P	Field mustard	mitochondrion	50.5	59.53
Bra039662.1-P	Field mustard	mitochondrion	49.75	58.82
Bra028624.1-P	Field mustard	cytosol	51.74	58.1
Bra009397.1-P	Field mustard	cytosol	51.74	58.1
Bra030204.1-P	Field mustard	cytosol	50.75	57.79
AT3G53910.1	Thale cress	cytosol	11.94	44.44
Bra019790.1-P	Field mustard	plastid	37.56	38.62

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:23.1.3.4.3	Gene3D:3.40.50.720	Gene3D:3.90.110.10	ProteinID:ACI25097	ProteinID:ACI25097.1
EnsemblPlantsGene:Bra018137	EnsemblPlants:Bra018137.1	EnsemblPlants:Bra018137.1-P	EMBL:FJ208590	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0030060	GO:GO:0055114
InterPro:IPR015955	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	UniProt:M4DNQ0	InterPro:Malate_DH_AS
InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	ScanProsite:PS00068	PANTHER:PTHR11540
PANTHER:PTHR11540:SF46	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI000253F3FD	SEG:seg

Description

AT3G47520 (E=3e-187) MDH | MDH (MALATE DEHYDROGENASE); L-malate dehydrogenase/ binding / catalytic/ malate dehydrogenase/ oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor

Coordinates

chrA06:-:10508030..10509238

Molecular Weight (calculated)

42262.6 Da

IEP (calculated)

8.826

GRAVY (calculated)

0.054

Length

402 amino acids

Sequence
(BLAST)

001: MAAASSISIG STVPRASSSS SSSSLPQSRA QAVNFNYSLP RFTALRSSTL LSGPDSSSFA KSLRGSVTKP QSTDTKPYGL NINASYKVSV LGAAGGIGQP
101: LSLLIKMSPL VSTLHLYDIA NVKGVAADLS HCNTPSQVRD FTGPAELADC LKDVNVVVIP AGVPRKPGMT RDDLFNINAG IVKTLVEAVA GNCPNAFIHI
201: ISNPVNSTVP IAAEVLRKKG VYDPKKLFGV TTLDVVRANT FVSQKKNLKL IDVDVPVIGG HAGITILPLL SKTKPSVSFT DEEIEKLTVR IQNAGTEVVD
301: AKAGAGSATL SMAYAAARFV ESSLRALDGD GDVYECSFVD STLTDLPFFA SRIKIGRNGV EAVIESDLQG LTEYEHKALE ALKPELKASI EKGVAFANKP
401: AN

Best Arabidopsis Sequence Match ( AT3G47520.1 )
(BLAST)

001: MATATSASLF STVSSSYSKA SSIPHSRLQS VKFNSVPSFT GLKSTSLISG SDSSSLAKTL RGSVTKAQTS DKKPYGFKIN ASYKVAVLGA AGGIGQPLSL
101: LIKMSPLVST LHLYDIANVK GVAADLSHCN TPSQVRDFTG PSELADCLKD VNVVVIPAGV PRKPGMTRDD LFNINANIVK TLVEAVAENC PNAFIHIISN
201: PVNSTVPIAA EVLKKKGVYD PKKLFGVTTL DVVRANTFVS QKKNLKLIDV DVPVIGGHAG ITILPLLSKT KPSVNFTDEE IQELTVRIQN AGTEVVDAKA
301: GAGSATLSMA YAAARFVESS LRALDGDGDV YECSFVESTL TDLPFFASRV KIGKNGLEAV IESDLQGLTE YEQKALEALK VELKASIDKG VAFANKPAAA
401: AAN

Arabidopsis Description

MDHMalate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.