Factsheet for Bra039662.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24107	Canola	mitochondrion	98.53	98.53
Bra038112.1-P	Field mustard	mitochondrion	88.53	96.47
Bra030951.1-P	Field mustard	mitochondrion	96.47	96.19
AT1G53240.1	Thale cress	mitochondrion	94.71	94.43
KRH55117	Soybean	mitochondrion	85.88	84.64
KRH26205	Soybean	mitochondrion	85.29	84.06
Solyc12g014180.1.1	Tomato	mitochondrion, unclear	82.06	81.58
Os01t0649100-01	Rice	mitochondrion	80.88	80.88
PGSC0003DMT400039788	Potato	mitochondrion	80.88	80.65
PGSC0003DMT400032266	Potato	cytosol, extracellular	82.06	80.64
Zm00001d044042_P001	Maize	extracellular, mitochondrion, plastid	80.59	80.59
Solyc07g062650.2.1	Tomato	extracellular	81.18	79.77
TraesCS1A01G412900.1	Wheat	plastid	80.0	79.77
HORVU3Hr1G058460.1	Barley	mitochondrion	80.0	79.77
EES19985	Sorghum	mitochondrion	79.71	79.71
TraesCS1D01G420500.1	Wheat	mitochondrion	79.71	79.47
TraesCS1B01G443200.1	Wheat	extracellular, mitochondrion	79.71	79.47
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	81.18	79.31
Os05t0574400-01	Rice	extracellular	79.12	79.12
VIT_19s0014g01640.t01	Wine grape	mitochondrion	80.59	78.96
Zm00001d039089_P001	Maize	mitochondrion	78.82	78.82
TraesCS3D01G236200.1	Wheat	mitochondrion	78.82	78.82
TraesCS3B01G265000.1	Wheat	golgi, mitochondrion, unclear	78.82	78.82
GSMUA_Achr4P08580_001	Banana	mitochondrion	80.29	78.67
TraesCS3A01G234800.2	Wheat	mitochondrion	77.65	77.65
Zm00001d009640_P002	Maize	mitochondrion, plasma membrane	79.41	73.37
Bra030204.1-P	Field mustard	cytosol	61.76	59.49
Bra009397.1-P	Field mustard	cytosol	61.47	58.38
Bra028624.1-P	Field mustard	cytosol	60.88	57.82
KXG33002	Sorghum	cytosol, nucleus, peroxisome	80.29	56.64
HORVU1Hr1G090710.1	Barley	cytosol	63.53	54.14
Bra019504.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	24.12	51.57
Bra018137.1-P	Field mustard	plastid	58.82	49.75
HORVU1Hr1G090720.1	Barley	peroxisome	17.65	28.44
Bra019790.1-P	Field mustard	plastid	32.35	28.13

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:2.3.8	Gene3D:3.40.50.720	Gene3D:3.90.110.10	EnsemblPlantsGene:Bra039662	EnsemblPlants:Bra039662.1
EnsemblPlants:Bra039662.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099
GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615
GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH
InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	UniProt:M4FEZ0	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR11540
PANTHER:PTHR11540:SF44	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI000253E7F8	SEG:seg

Description

AT1G53240 (E=2e-173) | malate dehydrogenase (NAD), mitochondrial

Coordinates

chrA06:+:659305..660812

Molecular Weight (calculated)

35760.4 Da

IEP (calculated)

8.583

GRAVY (calculated)

0.144

Length

340 amino acids

Sequence
(BLAST)

001: MFRSVIVRSS SSAKQSLLRR SFSSSVPERK VAILGAAGGI GQPLALLMKL NPLVSSLSLF DIANTPGVAA DVGHINTRSE VVGYMGDDEL AKALEGADLV
101: IIHAGVPRKP GMTRDDLYNI NAGIVKNLCS AIAKYCPHAL VNMISNPVNS TVPIAAEIFK KAGMYDEKKL FGVTTLDVVR AKTFYAGKAN VPVAEVNVPV
201: IGGHAGVTIL PLFSQATPQA NLSNDVLTAL TKRTQDGGTE VVEAKAGKGS ATLSMAYAGA LFADACLKGL NGVPDVVECS YVQSTITELP FFASKVRLGK
301: NGVEEVLDLG PLSDFEKQGL EALKPELKSS IEKGVKFANQ

Best Arabidopsis Sequence Match ( AT1G53240.1 )
(BLAST)

001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q

Arabidopsis Description

mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.