Factsheet for Zm00001d039089_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

extracellular: 20408568
plastid: 22065420
mitochondrion: 22607058
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 22607058 doi

D Dahal, BP Mooney, KJ Newton

Division of Biological Sciences, University of Missouri, Columbia, MO 65211, USA.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19985	Sorghum	mitochondrion	96.76	96.76
Zm00001d044042_P001	Maize	extracellular, mitochondrion, plastid	91.18	91.18
Os05t0574400-01	Rice	extracellular	91.18	91.18
Zm00001d009640_P002	Maize	mitochondrion, plasma membrane	97.65	90.22
TraesCS1B01G443200.1	Wheat	extracellular, mitochondrion	88.24	87.98
TraesCS1A01G412900.1	Wheat	plastid	88.24	87.98
TraesCS1D01G420500.1	Wheat	mitochondrion	87.94	87.68
Solyc07g062650.2.1	Tomato	extracellular	84.41	82.95
PGSC0003DMT400032266	Potato	cytosol, extracellular	84.12	82.66
KRH55117	Soybean	mitochondrion	83.82	82.61
GSMUA_Achr4P08580_001	Banana	mitochondrion	84.12	82.42
KRH26205	Soybean	mitochondrion	83.24	82.03
PGSC0003DMT400039788	Potato	mitochondrion	82.06	81.82
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	83.53	81.61
Solyc12g014180.1.1	Tomato	mitochondrion, unclear	81.76	81.29
VIT_10s0003g01000.t01	Wine grape	mitochondrion	83.82	80.97
CDY59402	Canola	mitochondrion	80.29	80.06
Bra030951.1-P	Field mustard	mitochondrion	80.29	80.06
Bra038112.1-P	Field mustard	mitochondrion	73.24	79.81
AT3G15020.1	Thale cress	mitochondrion	80.0	79.77
CDY25868	Canola	mitochondrion	79.71	79.47
CDY02518	Canola	mitochondrion	79.71	79.47
CDY24107	Canola	mitochondrion	79.41	79.41
VIT_19s0014g01640.t01	Wine grape	mitochondrion	80.88	79.25
CDY55845	Canola	mitochondrion	79.41	79.18
AT1G53240.1	Thale cress	mitochondrion	79.41	79.18
Bra039662.1-P	Field mustard	mitochondrion	78.82	78.82
CDY26002	Canola	mitochondrion	79.41	78.72
CDY55842	Canola	mitochondrion	30.0	75.56
Zm00001d034241_P001	Maize	extracellular, plastid	65.29	62.01
Zm00001d041243_P001	Maize	mitochondrion	65.29	61.67
HORVU1Hr1G090710.1	Barley	cytosol	70.0	59.65
Zm00001d050409_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	60.88	52.14
Zm00001d032187_P001	Maize	plastid	59.71	51.52
Zm00001d022229_P001	Maize	plastid	55.29	48.96
HORVU1Hr1G090720.1	Barley	peroxisome	16.47	26.54

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	EntrezGene:100274264	MapMan:2.3.8	Gene3D:3.40.50.720	Gene3D:3.90.110.10	ProteinID:AQK88711.1
UniProt:B4FZU8	EMBL:BT042636	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091
GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955
InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR11540
PANTHER:PTHR11540:SF45	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI00017B7490	EnsemblPlantsGene:Zm00001d039089
EnsemblPlants:Zm00001d039089_P001	EnsemblPlants:Zm00001d039089_T001	SEG:seg	:	:	:

Description

malate dehydrogenase2Malate dehydrogenase

Coordinates

chr6:-:169782693..169787359

Molecular Weight (calculated)

35287.8 Da

IEP (calculated)

8.308

GRAVY (calculated)

0.104

Length

340 amino acids

Sequence
(BLAST)

001: MRPALLKSTA ELLRRSRGYA SSANPERKVA ILGAAGGIGQ PLSLLMKLNP LVSSLSLYDI AGTPGVAADV SHINSPALVK GFMGDDQLGE ALEGSDVVII
101: PAGVPRKPGM TRDDLFNINA GIVKGLCTAI AKHCPNALVN MISNPVNSTV PIAAEVFKKA GTYDEKKLFG VTTLDVVRAK TFYAGKAGVP VTGVNVPVVG
201: GHAGITILPL FSQATPASNS LSQEDIEALT KRTQDGGTEV VEAKAGKGSA TLSMAYAGAV FADACLKGLN GVPDIVECSF VQSTVTELPF FASKVRLGKN
301: GVEEVLGLGE LNEFEKKGLE NLKGELKSSI DKGIKFAHGN

Best Arabidopsis Sequence Match ( AT1G53240.1 )
(BLAST)

001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q

Arabidopsis Description

mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.