Factsheet for Zm00001d022229_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU90313	Sorghum	plastid	84.11	83.25
Os07t0630800-03	Rice	plastid	75.0	71.29
Zm00001d050409_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	59.64	57.68
Zm00001d032187_P001	Maize	plastid	57.81	56.35
Zm00001d039089_P001	Maize	mitochondrion	48.96	55.29
Zm00001d044042_P001	Maize	extracellular, mitochondrion, plastid	48.7	55.0
Zm00001d034241_P001	Maize	extracellular, plastid	48.18	51.68
Zm00001d041243_P001	Maize	mitochondrion	48.18	51.39
Zm00001d009640_P002	Maize	mitochondrion, plasma membrane	48.7	50.82

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	EntrezGene:107305678	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:35.1	UniProt:A0A1D6IKH4
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060
GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	ProteinID:ONM59903.1	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
PANTHER:PTHR11540	PANTHER:PTHR11540:SF25	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI000221D984
EnsemblPlantsGene:Zm00001d022229	EnsemblPlants:Zm00001d022229_P001	EnsemblPlants:Zm00001d022229_T001	SEG:seg	:	:

Description

Malate dehydrogenase chloroplastic

Coordinates

chr7:-:173196557..173197711

Molecular Weight (calculated)

40036.9 Da

IEP (calculated)

7.311

GRAVY (calculated)

0.111

Length

384 amino acids

Sequence
(BLAST)

001: MAAAAIATVS LSSVPREKRP RHCASTFNFN ARQFSNSSSH CHSFTLRPRV PRPRAACRVI VAQAGGGYKV AILGAAGGVG QPLSLLAKMS PLVSALHLYD
101: IAADVEGVAA DLSHCNTPAR VSGFTGEDEL AGCLSGADVV VVAAGVPRKP GMTREDDRFG ANAGVVRELV AAVADHAPPG ALVHVISDPV DSTVPVAAEV
201: LKHKGAYDPR RLLGVTALDV VRANAFVAAR KGLPLADVDV PVVGGHAAAT ILPLLSKARP KAAFTDDEVE ELTARVRDAG AGGSATLSMA YAAARFLEAS
301: LRGLDGHGDV YECAYVQSQV VPELPFFACR VRLGRDGVEE VMGSELRALT DYEARALEAL KPTLKASIDK GVAYVQQHQE AALN

Best Arabidopsis Sequence Match ( AT3G47520.1 )
(BLAST)

001: MATATSASLF STVSSSYSKA SSIPHSRLQS VKFNSVPSFT GLKSTSLISG SDSSSLAKTL RGSVTKAQTS DKKPYGFKIN ASYKVAVLGA AGGIGQPLSL
101: LIKMSPLVST LHLYDIANVK GVAADLSHCN TPSQVRDFTG PSELADCLKD VNVVVIPAGV PRKPGMTRDD LFNINANIVK TLVEAVAENC PNAFIHIISN
201: PVNSTVPIAA EVLKKKGVYD PKKLFGVTTL DVVRANTFVS QKKNLKLIDV DVPVIGGHAG ITILPLLSKT KPSVNFTDEE IQELTVRIQN AGTEVVDAKA
301: GAGSATLSMA YAAARFVESS LRALDGDGDV YECSFVESTL TDLPFFASRV KIGKNGLEAV IESDLQGLTE YEQKALEALK VELKASIDKG VAFANKPAAA
401: AAN

Arabidopsis Description

MDHMalate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.