Factsheet for Zm00001d034241_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plastid
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

extracellular: 20408568
plastid: 22065420

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G417600.1	Wheat	nucleus	88.55	88.8
Os03t0773800-01	Rice	plastid	87.15	88.14
HORVU5Hr1G098890.10	Barley	plastid	88.55	87.81
TraesCS5B01G412500.1	Wheat	plastid	84.92	81.5
TraesCS5A01G407700.1	Wheat	cytosol, peroxisome, plastid	85.2	80.9
Zm00001d041243_P001	Maize	mitochondrion	79.05	78.61
KXG37460	Sorghum	mitochondrion	93.85	76.02
Zm00001d039089_P001	Maize	mitochondrion	62.01	65.29
Zm00001d044042_P001	Maize	extracellular, mitochondrion, plastid	60.89	64.12
Zm00001d009640_P002	Maize	mitochondrion, plasma membrane	62.29	60.6
Zm00001d050409_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	55.31	49.87
Zm00001d032187_P001	Maize	plastid	54.75	49.75
Zm00001d022229_P001	Maize	plastid	51.68	48.18

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.7.3.6.5	UniProt:A0A1D6L6A9	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752
GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N
InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	ProteinID:ONM09839.1	PFAM:PF00056
PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF26	SUPFAM:SSF51735
SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI0002216407	EnsemblPlantsGene:Zm00001d034241	EnsemblPlants:Zm00001d034241_P001	EnsemblPlants:Zm00001d034241_T001

Description

Malate dehydrogenase

Coordinates

chr1:-:287663868..287667586

Molecular Weight (calculated)

37465.5 Da

IEP (calculated)

7.826

GRAVY (calculated)

0.139

Length

358 amino acids

Sequence
(BLAST)

001: MQPDANAPSH RLARVAAHLN PQRPQMEEGA SALRLVVCRA KGGAPGFKVA ILGAAGGIGQ PLSLLMKMNP LVSVLHLYDV VNTPGVTADV SHMDTSAVVR
101: GFLGAQQLDA ALTGMDLVII PAGLPRKPGM TRDDLFNKNA GIVRTLCEGV ARCCPNAIVN LISNPVNSTV PIAAEVFKKA GTYDPKRLLG VTTLDVARAN
201: TFVAEVLGVD PRDVSVPVVG GHAGITILPL LSQVTPPSSF TQDETRYLTD RIQNGGTEVV EAKAGSGSAT LSMAFAASKF ADACLRAMRG EAGIVECSYV
301: ASEVTELPFF ATKVRLGRGG AEEILPLGPL NDFERAGLEA AKKELGESIQ KGIAFMSK

Best Arabidopsis Sequence Match ( AT5G09660.1 )
(BLAST)

001: MEFRGDANQR IARISAHLTP QMEAKNSVIG RENCRAKGGN PGFKVAILGA AGGIGQSLSL LMKMNPLVSL LHLYDVVNAP GVTADVSHMD TGAVVRGFLG
101: AKQLEDALTG MDLVIIPAGI PRKPGMTRDD LFKINAGIVK TLCEGVAKCC PNAIVNLISN PVNSTVPIAA EVFKKAGTYD PKKLLGVTTL DVARANTFVA
201: EVLGLDPREV DVPVVGGHAG VTILPLLSQV KPPSSFTPQE IEYLTNRIQN GGTEVVEAKA GAGSATLSMA YAAAKFADAC LRGLRGDANV VECSFVASQV
301: TELAFFATKV RLGRTGAEEV YQLGPLNEYE RIGLEKAKDE LAGSIQKGVE FIRK

Arabidopsis Description

PMDH2Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:B3H560]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.