Factsheet for TraesCS5A01G407700.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 1
plastid 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, peroxisome, plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G412500.1	Wheat	plastid	96.29	97.32
TraesCS5D01G417600.1	Wheat	nucleus	90.45	95.52
HORVU5Hr1G098890.10	Barley	plastid	89.92	93.91
Os03t0773800-01	Rice	plastid	80.64	85.88
Zm00001d034241_P001	Maize	extracellular, plastid	80.9	85.2
TraesCS5A01G014300.1	Wheat	nucleus, plastid	75.07	79.05
KXG37460	Sorghum	mitochondrion	80.64	68.78
TraesCS3A01G234800.2	Wheat	mitochondrion	55.44	61.47
TraesCS1A01G412900.1	Wheat	plastid	53.85	59.53
TraesCS1A01G348500.1	Wheat	plastid	50.93	48.24
TraesCS7A01G386600.1	Wheat	plastid	50.13	47.97

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.7.3.6.5	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060
GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF26	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772
EnsemblPlantsGene:TraesCS5A01G407700	EnsemblPlants:TraesCS5A01G407700.1	TIGR:cd01337	SEG:seg	:	:

Description

No Description!

Coordinates

chr5A:-:598389423..598392958

Molecular Weight (calculated)

39786.9 Da

IEP (calculated)

6.932

GRAVY (calculated)

0.011

Length

377 amino acids

Sequence
(BLAST)

001: MHPDATSPSH RIARVAAHLN PTRPQMEEGA ALRPAACRAK GGAPGFKVAV VGAAGGIGQS LSLLMKMNPL VSVLHLYDVV NTPGVTADVS HMDTSAVVRG
101: FIGQQQLEAA LTGMDLVIIP AGLPRKPGMT RDDLFNKNAG IVRSICEGVA KSCPNAIVNL ISNPVNSTVP IAAEVFKRAG TYCPKRLLGV TTLDVARANT
201: FVAEVLGVDP REVNVPVVGG HAGVTILPLL SQVSPPCSFT PDEISYLTNR IQNGGTEVVE AKAGAGSATL SMAFAAAKFA DACLRGMRGD AGIVECSYVA
301: SEVTELPFFA SKVRLGRGGA EEILPLGPLN DFESRPGEGE EGAEREHSEG RVLHEQVRSY EWIAPDLYRY AKTKERV

Best Arabidopsis Sequence Match ( AT5G09660.4 )
(BLAST)

001: MEFRGDANQR IARISAHLTP QMEAKNSVIG RENCRAKGGN PGFKVAILGA AGGIGQSLSL LMKMNPLVSL LHLYDVVNAP GVTADVSHMD TGAVVRGFLG
101: AKQLEDALTG MDLVIIPAGI PRKPGMTRDD LFKINAGIVK TLCEGVAKCC PNAIVNLISN PVNSTVPIAA EVFKKAGTYD PKKLLGVTTL DVARANTFVA
201: EVLGLDPREV DVPVVGGHAG VTILPLLSQV KPPSSFTPQE IEYLTNRIQN GGTEVVEAKA GAGSATLSMA YAAAKFADAC LRGLRGDANV VECSFVASQV
301: NLENSFTLFH CFNGFNLKWQ LTTGDRISFL CNKSAPWPYR SRGSVSAWTL KRIRKDWSGE SKR

Arabidopsis Description

PMDH2Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:B3H560]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.