CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034241_P001	Maize	extracellular, plastid	76.02	93.85
TraesCS5D01G417600.1	Wheat	nucleus	71.49	88.52
Os03t0773800-01	Rice	plastid	70.59	88.14
HORVU5Hr1G098890.10	Barley	plastid	71.49	87.53
TraesCS5B01G412500.1	Wheat	plastid	68.55	81.23
TraesCS5A01G407700.1	Wheat	cytosol, peroxisome, plastid	68.78	80.64
KXG24112	Sorghum	plastid	69.91	69.28
EES19985	Sorghum	mitochondrion	50.0	65.0
OQU90313	Sorghum	plastid	45.7	52.06
OQU80513	Sorghum	plastid	45.48	51.02
KXG33002	Sorghum	cytosol, nucleus, peroxisome	51.13	46.89

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.7.3.6.5	UniProt:A0A1B6QHU0	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0030060
GO:GO:0055114	InterPro:IPR015955	EnsemblPlants:KXG37460	ProteinID:KXG37460	ProteinID:KXG37460.1	InterPro:Lactate/malate_DH_C
InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056
PFAM:PF02866	ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF26	MetaCyc:PWY-1622	MetaCyc:PWY-5392
MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7115
MetaCyc:PWY-7383	EnsemblPlantsGene:SORBI_3001G073900	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI00081ABFA3
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:5624795..5634742

Molecular Weight (calculated)

46064.7 Da

IEP (calculated)

9.280

GRAVY (calculated)

0.017

Length

442 amino acids

Sequence
(BLAST)

001: MMSRPGAPSP PHRLPIPRRP AATGHRITHG GTIQKRGSFS NFPIKTPPAS RQSTNTGSSS NQQLNHAPLP LPSPPASAEL GLEAAMQPDA NAPSHRLARV
101: AAHLRPQMEE GAVAFALRPA VCRAKGGAPG FKVAILGAAG GIGQPLSLLM KMNPLVSVLH LYDVVNTPGV TADISHMDTS AVVRGFLGAQ QLDAALTGMD
201: LVIIPAGVPR KPGMTRDDLF NINAGIVRTL CEGVSRCCPN AIVNLISNPV NSTVPIAAEV FKKAGTYDPK RLLGVTTLDV ARANTFVAEV LGVDPRDVSV
301: PVVGGHAGVT ILPLLSQVTP PSSFTQDEIK YLTDRIQNGG TEVVEAKAGS GSATLSMAFA AAKFGDACLR AMRGDAGIVE CSYVASEVTE LPFFASKVRL
401: GRGGAEEILP LGPLNDSERA GLEAAKKELS ESIQKGIAFV NK

Best Arabidopsis Sequence Match ( AT5G09660.1 )
(BLAST)

001: MEFRGDANQR IARISAHLTP QMEAKNSVIG RENCRAKGGN PGFKVAILGA AGGIGQSLSL LMKMNPLVSL LHLYDVVNAP GVTADVSHMD TGAVVRGFLG
101: AKQLEDALTG MDLVIIPAGI PRKPGMTRDD LFKINAGIVK TLCEGVAKCC PNAIVNLISN PVNSTVPIAA EVFKKAGTYD PKKLLGVTTL DVARANTFVA
201: EVLGLDPREV DVPVVGGHAG VTILPLLSQV KPPSSFTPQE IEYLTNRIQN GGTEVVEAKA GAGSATLSMA YAAAKFADAC LRGLRGDANV VECSFVASQV
301: TELAFFATKV RLGRTGAEEV YQLGPLNEYE RIGLEKAKDE LAGSIQKGVE FIRK

Arabidopsis Description

PMDH2Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:B3H560]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.