Factsheet for TraesCS5D01G417600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
plastid 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, peroxisome, plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

nucleus: 26579155

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G098890.10	Barley	plastid	99.44	98.34
TraesCS5B01G412500.1	Wheat	plastid	95.52	91.42
TraesCS5A01G407700.1	Wheat	cytosol, peroxisome, plastid	95.52	90.45
Os03t0773800-01	Rice	plastid	88.8	89.55
Zm00001d034241_P001	Maize	extracellular, plastid	88.8	88.55
TraesCS5D01G019700.1	Wheat	nucleus	83.19	82.96
KXG37460	Sorghum	mitochondrion	88.52	71.49
TraesCS3D01G236200.1	Wheat	mitochondrion	61.34	64.41
TraesCS1D01G420500.1	Wheat	mitochondrion	58.82	61.58
TraesCS1D01G351500.1	Wheat	golgi, plastid	56.02	50.25
TraesCS7D01G383100.1	Wheat	plastid, vacuole	55.18	47.47

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.7.3.6.5	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060
GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF26	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772
EnsemblPlantsGene:TraesCS5D01G417600	EnsemblPlants:TraesCS5D01G417600.1	TIGR:cd01337	SEG:seg	:	:

Description

No Description!

Coordinates

chr5D:-:479785108..479788715

Molecular Weight (calculated)

37265.2 Da

IEP (calculated)

8.062

GRAVY (calculated)

0.130

Length

357 amino acids

Sequence
(BLAST)

001: MHPDATSPSH RIARVAAHLN PTRPQMEEGA ALRPAACRAK GGAPGFKVAV VGAAGGIGQS LSLLMKMNPL VSVLHLYDVV NTPGVTADVS HMDTSAVVRG
101: FIGQQQLEAA LTGMDLVIIP AGLPRKPGMT RDDLFNKNAG IVRSICEGVA KSCPNAIVNL ISNPVNSTVP IAAEVFKRAG TYCPKRLLGV TTLDVARANT
201: FVAEVLGVDP REVNVPVVGG HAGVTILPLL SQVSPPCSFT PDEISYLTNR IQNGGTEVVE AKAGAGSATL SMAFAAAKFA DACLRGMRGD AGIVECSYVA
301: SEVTELPFFA SKVRLGRGGA EEILPLGPLN DFERAGLEKA KKELSESIEK GVSFMNK

Best Arabidopsis Sequence Match ( AT2G22780.1 )
(BLAST)

001: MDPNQRIARI SAHLNPPNLH NQIADGSGLN RVACRAKGGS PGFKVAILGA AGGIGQPLAM LMKMNPLVSV LHLYDVANAP GVTADISHMD TSAVVRGFLG
101: QPQLEEALTG MDLVIIPAGV PRKPGMTRDD LFNINAGIVR TLSEAIAKCC PKAIVNIISN PVNSTVPIAA EVFKKAGTFD PKKLMGVTML DVVRANTFVA
201: EVMSLDPREV EVPVVGGHAG VTILPLLSQV KPPCSFTQKE IEYLTDRIQN GGTEVVEAKA GAGSATLSMA YAAVEFADAC LRGLRGDANI VECAYVASHV
301: TELPFFASKV RLGRCGIDEV YGLGPLNEYE RMGLEKAKKE LSVSIHKGVT FAKK

Arabidopsis Description

PMDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q0WUS4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.