Factsheet for TraesCS1D01G420500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, peroxisome
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	peroxisome

mitochondrion: 21043471
mitochondrion: 23895732
golgi: 25769308
unclear: 25769308
mitochondrion: 26136264

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 21043471 doi

RP Jacoby, AH Millar, NL Taylor

ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks, M316, The University of Western Australia, 35 Stirling Highway, Crawley,WA 6009, Australia.

msms PMID: 23895732 doi

RP Jacoby, AH Millar, NL Taylor

ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks (CABiN), M316, The University of Western Australia , 35 Stirling Highway, Crawley, WA 6009, Australia.

msms PMID: 26136264 doi

S Wang, G Zhang, Y Zhang, Q Song, Z Chen, J Wang, J Guo, N Niu, J Wang, S Ma

College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China zhanggaisheng18@sohu.com., College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China., Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G412900.1	Wheat	plastid	99.41	99.41
TraesCS1B01G443200.1	Wheat	extracellular, mitochondrion	98.53	98.53
Os05t0574400-01	Rice	extracellular	90.03	90.29
EES19985	Sorghum	mitochondrion	87.98	88.24
Zm00001d039089_P001	Maize	mitochondrion	87.68	87.94
TraesCS3D01G236200.1	Wheat	mitochondrion	85.92	86.18
VIT_10s0003g01000.t01	Wine grape	mitochondrion	84.75	82.1
Bra038112.1-P	Field mustard	mitochondrion	74.49	81.41
Zm00001d009640_P002	Maize	mitochondrion, plasma membrane	87.68	81.25
CDY25868	Canola	mitochondrion	81.23	81.23
CDY55845	Canola	mitochondrion	80.94	80.94
CDY59402	Canola	mitochondrion	80.94	80.94
Bra030951.1-P	Field mustard	mitochondrion	80.94	80.94
Solyc07g062650.2.1	Tomato	extracellular	82.11	80.92
PGSC0003DMT400032266	Potato	cytosol, extracellular	82.11	80.92
CDY02518	Canola	mitochondrion	80.65	80.65
KRH26205	Soybean	mitochondrion	81.52	80.58
KRH55117	Soybean	mitochondrion	81.52	80.58
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	82.11	80.46
GSMUA_Achr4P08580_001	Banana	mitochondrion	81.82	80.4
AT1G53240.1	Thale cress	mitochondrion	80.35	80.35
CDY26002	Canola	mitochondrion	80.65	80.17
CDY24107	Canola	mitochondrion	79.77	80.0
Solyc12g014180.1.1	Tomato	mitochondrion, unclear	80.06	79.82
PGSC0003DMT400039788	Potato	mitochondrion	79.77	79.77
Bra039662.1-P	Field mustard	mitochondrion	79.47	79.71
AT3G15020.1	Thale cress	mitochondrion	78.89	78.89
VIT_19s0014g01640.t01	Wine grape	mitochondrion	79.18	77.81
CDY55842	Canola	mitochondrion	29.33	74.07
HORVU1Hr1G090710.1	Barley	cytosol	76.25	65.16
TraesCS5D01G019700.1	Wheat	nucleus	64.52	61.45
TraesCS5D01G417600.1	Wheat	nucleus	61.58	58.82
TraesCS1D01G351500.1	Wheat	golgi, plastid	58.06	49.75
TraesCS7D01G383100.1	Wheat	plastid, vacuole	57.48	47.23
HORVU1Hr1G090720.1	Barley	peroxisome	17.3	27.96

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:2.3.8	Gene3D:3.40.50.720	Gene3D:3.90.110.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060
GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF45	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772
EnsemblPlantsGene:TraesCS1D01G420500	EnsemblPlants:TraesCS1D01G420500.1	TIGR:cd01337	SEG:seg	:	:

Description

No Description!

Coordinates

chr1D:-:476904924..476909172

Molecular Weight (calculated)

35498.1 Da

IEP (calculated)

8.605

GRAVY (calculated)

0.164

Length

341 amino acids

Sequence
(BLAST)

001: MRMSLLRSAS QHLRRRRDYS SAAASPERKV AILGAAGGIG QPLALLMKLN PLVSSLSLYD IAATPGVAAD VSHINTRALV KGFVGDDQLG EALEGADLVI
101: IPAGVPRKPG MTRDDLFKIN AGIVKGLCTA IARHCPNALV NMISNPVNST VPIAAEVFKK AGTYDEKKLF GVTTLDVVRA KTFYAGKANV PVTGVNVPVV
201: GGHAGITILP LFSQATPASN ALSHEDLVAL TKRTQDGGTE VVEAKAGKGS ATLSMAYAGA VFGDACLKGL NGVPDIVECS FVQSTVTELP FFASKVRLGK
301: SGVEEVMGLG ELSALEKEGL ESLKGELLSS IEKGVKFAQE S

Best Arabidopsis Sequence Match ( AT1G53240.1 )
(BLAST)

001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q

Arabidopsis Description

mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.