CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24107	Canola	mitochondrion	97.67	98.53
CDY02518	Canola	mitochondrion	97.67	98.24
CDY59402	Canola	mitochondrion	97.38	97.95
CDY25868	Canola	mitochondrion	96.79	97.36
CDY55845	Canola	mitochondrion	96.5	97.07
AT1G53240.1	Thale cress	mitochondrion	95.34	95.89
CDY55842	Canola	mitochondrion	33.53	85.19
KRH55117	Soybean	mitochondrion	85.42	84.93
KRH26205	Soybean	mitochondrion	84.84	84.35
Solyc12g014180.1.1	Tomato	mitochondrion, unclear	82.51	82.75
Os01t0649100-01	Rice	mitochondrion	81.34	82.06
PGSC0003DMT400039788	Potato	mitochondrion	81.34	81.82
Zm00001d044042_P001	Maize	extracellular, mitochondrion, plastid	81.05	81.76
TraesCS1A01G412900.1	Wheat	plastid	80.47	80.94
HORVU3Hr1G058460.1	Barley	mitochondrion	80.47	80.94
TraesCS1B01G443200.1	Wheat	extracellular, mitochondrion	80.17	80.65
TraesCS1D01G420500.1	Wheat	mitochondrion	80.17	80.65
PGSC0003DMT400032266	Potato	cytosol, extracellular	81.34	80.64
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	81.63	80.46
Os05t0574400-01	Rice	extracellular	79.59	80.29
EES19985	Sorghum	mitochondrion	79.59	80.29
Solyc07g062650.2.1	Tomato	extracellular	80.76	80.06
TraesCS3D01G236200.1	Wheat	mitochondrion	79.3	80.0
GSMUA_Achr4P08580_001	Banana	mitochondrion	80.76	79.83
VIT_19s0014g01640.t01	Wine grape	mitochondrion	80.76	79.83
TraesCS3B01G265000.1	Wheat	golgi, mitochondrion, unclear	79.01	79.71
Zm00001d039089_P001	Maize	mitochondrion	78.72	79.41
TraesCS3A01G234800.2	Wheat	mitochondrion	77.84	78.53
Zm00001d009640_P002	Maize	mitochondrion, plasma membrane	79.3	73.91
CDY25631	Canola	plastid	61.81	60.06
CDX89514	Canola	cytosol	61.52	59.77
CDY21594	Canola	cytosol	60.93	58.38
CDX85803	Canola	plastid	60.93	58.38
CDY44813	Canola	cytosol	60.93	58.38
KXG33002	Sorghum	cytosol, nucleus, peroxisome	80.76	57.47
HORVU1Hr1G090710.1	Barley	cytosol	63.85	54.89
CDY21789	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	24.49	52.83
CDY61271	Canola	plastid	59.77	51.25
CDY43430	Canola	cytosol	25.66	50.87
CDY17513	Canola	cytosol	22.45	49.36
CDY47402	Canola	plastid	60.06	43.83
CDX98040	Canola	cytosol	19.24	39.52
CDX69893	Canola	cytosol	61.52	38.22
CDY34030	Canola	mitochondrion	29.74	36.56
CDY19424	Canola	cytosol	18.08	36.47
CDX77861	Canola	plastid	26.82	32.17
HORVU1Hr1G090720.1	Barley	peroxisome	17.49	28.44

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:2.3.8	Gene3D:3.40.50.720	Gene3D:3.90.110.10	GO:A0A078GLG4	UniProt:A0A078GLG4
EnsemblPlants:CDY26002	ProteinID:CDY26002	ProteinID:CDY26002.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00033534001	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF44	MetaCyc:PWY-1622	MetaCyc:PWY-5392	MetaCyc:PWY-561
MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7115	MetaCyc:PWY-7383
SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI0004EE82F8	SEG:seg	:

Description

BnaC06g06220DMalate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A078GLG4]

Coordinates

chrLK032184:+:49596..51564

Molecular Weight (calculated)

35939.6 Da

IEP (calculated)

8.299

GRAVY (calculated)

0.160

Length

343 amino acids

Sequence
(BLAST)

001: MFRSVIVRSS SSAKQSLLRR SFSSSSSSVP ERKVAILGAA GGIGQPLALL MKLNPLVSSL SLFDIANTPG VAADVGHINT RSEVVGYMGD DELAKALEGA
101: DLVIIPAGVP RKPGMTRDDL FNINAGIVKN LCSAIAKYCP HALVNMISNP VNSTVPIAAE IFKKAGMYDE KKLFGVTTLD VVRAKTFYAG KANVPVAEVN
201: VPVIGGHAGV TILPLFSQAT PQANLSSDVL TALTKRTQDG GTEVVEAKAG KGSATLSMAY AGALFADACL KGLNGVPDVV ECSYVQSTIT ELPFFASKVR
301: LGKNGVEEVL DLGPLSDFEK EGLEALKPEL KSSIEKGVKF ANQ

Best Arabidopsis Sequence Match ( AT1G53240.1 )
(BLAST)

001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q

Arabidopsis Description

mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.