Factsheet for TraesCS3A01G234800.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G265000.1	Wheat	golgi, mitochondrion, unclear	98.82	98.82
TraesCS3D01G236200.1	Wheat	mitochondrion	98.53	98.53
HORVU3Hr1G058460.1	Barley	mitochondrion	95.59	95.31
Zm00001d044042_P001	Maize	extracellular, mitochondrion, plastid	87.94	87.94
Os01t0649100-01	Rice	mitochondrion	87.94	87.94
TraesCS1A01G412900.1	Wheat	plastid	85.0	84.75
Bra030951.1-P	Field mustard	mitochondrion	79.12	78.89
CDY25868	Canola	mitochondrion	78.82	78.59
CDY59402	Canola	mitochondrion	78.82	78.59
AT1G53240.1	Thale cress	mitochondrion	78.82	78.59
Bra038112.1-P	Field mustard	mitochondrion	72.06	78.53
Solyc12g014180.1.1	Tomato	mitochondrion, unclear	78.82	78.36
CDY02518	Canola	mitochondrion	78.53	78.3
CDY55845	Canola	mitochondrion	78.53	78.3
PGSC0003DMT400039788	Potato	mitochondrion	78.53	78.3
KRH55117	Soybean	mitochondrion	79.41	78.26
CDY24107	Canola	mitochondrion	78.24	78.24
CDY26002	Canola	mitochondrion	78.53	77.84
KRH26205	Soybean	mitochondrion	78.82	77.68
Bra039662.1-P	Field mustard	mitochondrion	77.65	77.65
AT3G15020.1	Thale cress	mitochondrion	77.65	77.42
Solyc07g062650.2.1	Tomato	extracellular	78.53	77.17
PGSC0003DMT400032266	Potato	cytosol, extracellular	78.53	77.17
VIT_10s0003g01000.t01	Wine grape	mitochondrion	79.71	76.99
GSMUA_Achr4P08580_001	Banana	mitochondrion	77.65	76.08
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	77.35	75.57
VIT_19s0014g01640.t01	Wine grape	mitochondrion	75.88	74.35
CDY55842	Canola	mitochondrion	29.12	73.33
TraesCS5A01G014300.1	Wheat	nucleus, plastid	65.88	62.57
KXG33002	Sorghum	cytosol, nucleus, peroxisome	86.76	61.2
TraesCS5A01G407700.1	Wheat	cytosol, peroxisome, plastid	61.47	55.44
TraesCS7A01G386600.1	Wheat	plastid	59.41	51.27
TraesCS1A01G348500.1	Wheat	plastid	60.0	51.26

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:2.3.8	Gene3D:3.40.50.720	Gene3D:3.90.110.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060
GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF45	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772
EnsemblPlantsGene:TraesCS3A01G234800	EnsemblPlants:TraesCS3A01G234800.2	TIGR:cd01337	SEG:seg	:	:

Description

No Description!

Coordinates

chr3A:+:438599443..438602669

Molecular Weight (calculated)

35465.9 Da

IEP (calculated)

8.292

GRAVY (calculated)

0.134

Length

340 amino acids

Sequence
(BLAST)

001: MRPSVMRSAA QLLRRRNYSS ASGQQARKVA ILGAAGGIGQ PLSLLMKLNP LVSSLSLYDI AATPGVAADV SHINSPALVK GFMADDQLAE ALDGADLVII
101: PAGVPRKPGM TRDDLFNINA GIVKNLCTAI AKYCPNALVN MISNPVNSTV PIAAEVFKKA GTYDEKRLFG VTTLDVVRAR TFYAGKANVD VNTVDVPVVG
201: GHAGITILPL LTEATPSTNA LSAEEIKALT KRTQEGGTEV VEAKAGKGSA TLSMAYAGAV FGDACLKGLN GVPDIVECSY VQSTVTELPF FASKVRLGKN
301: GVEEVLGLGQ LTQFEKDGLE ALKGELKSSI EKGVAFTNAS

Best Arabidopsis Sequence Match ( AT1G53240.1 )
(BLAST)

001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q

Arabidopsis Description

mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.