Factsheet for Solyc12g014180.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039788	Potato	mitochondrion	97.37	97.65
Solyc07g062650.2.1	Tomato	extracellular	88.6	87.57
KRH55117	Soybean	mitochondrion	86.26	85.51
KRH26205	Soybean	mitochondrion	85.96	85.22
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	86.26	84.77
GSMUA_Achr4P08580_001	Banana	mitochondrion	85.38	84.15
Bra038112.1-P	Field mustard	mitochondrion	76.32	83.65
AT3G15020.1	Thale cress	mitochondrion	83.33	83.58
Os01t0649100-01	Rice	mitochondrion	83.04	83.53
Zm00001d044042_P001	Maize	extracellular, mitochondrion, plastid	82.75	83.24
Os05t0574400-01	Rice	extracellular	82.75	83.24
Bra030951.1-P	Field mustard	mitochondrion	82.46	82.7
CDY25868	Canola	mitochondrion	82.46	82.7
CDY59402	Canola	mitochondrion	82.46	82.7
CDY26002	Canola	mitochondrion	82.75	82.51
AT1G53240.1	Thale cress	mitochondrion	82.16	82.4
CDY55845	Canola	mitochondrion	82.16	82.4
CDY02518	Canola	mitochondrion	82.16	82.4
CDY24107	Canola	mitochondrion	81.58	82.06
Bra039662.1-P	Field mustard	mitochondrion	81.58	82.06
EES19985	Sorghum	mitochondrion	81.58	82.06
Zm00001d039089_P001	Maize	mitochondrion	81.29	81.76
VIT_19s0014g01640.t01	Wine grape	mitochondrion	82.46	81.27
HORVU3Hr1G058460.1	Barley	mitochondrion	80.12	80.35
TraesCS1B01G443200.1	Wheat	extracellular, mitochondrion	80.12	80.35
TraesCS3D01G236200.1	Wheat	mitochondrion	79.82	80.29
TraesCS1A01G412900.1	Wheat	plastid	79.82	80.06
TraesCS1D01G420500.1	Wheat	mitochondrion	79.82	80.06
TraesCS3B01G265000.1	Wheat	golgi, mitochondrion, unclear	79.53	80.0
TraesCS3A01G234800.2	Wheat	mitochondrion	78.36	78.82
CDY55842	Canola	mitochondrion	30.99	78.52
Zm00001d009640_P002	Maize	mitochondrion, plasma membrane	81.58	75.82
Solyc09g091070.1.1	Tomato	nucleus	52.92	60.74
Solyc02g063490.2.1	Tomato	plastid	61.11	59.38
KXG33002	Sorghum	cytosol, nucleus, peroxisome	82.75	58.71
HORVU1Hr1G090710.1	Barley	cytosol	63.74	54.64
Solyc03g115990.1.1	Tomato	plastid	59.94	49.76
HORVU1Hr1G090720.1	Barley	peroxisome	15.5	25.12

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:2.3.8	Gene3D:3.40.50.720	Gene3D:3.90.110.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060
GO:GO:0055114	InterPro:IPR015955	UniProt:K4DCV3	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N
InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866
PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF44	SUPFAM:SSF51735	SUPFAM:SSF56327
EnsemblPlantsGene:Solyc12g014180.1	EnsemblPlants:Solyc12g014180.1.1	TIGRFAMs:TIGR01772	UniParc:UPI000276A654	SEG:seg	:

Description

Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4DCV3]

Coordinates

chr12:-:5027817..5032069

Molecular Weight (calculated)

35656.1 Da

IEP (calculated)

9.090

GRAVY (calculated)

0.134

Length

342 amino acids

Sequence
(BLAST)

001: MRTSVVRLLA RRTSTAGLTR RGFASESAPD RKVAILGAAG GIGQPLSLLM KLNPLVSRLA LYDIAGTPGV AADVSHINTR SEILGYAGEE QLGKALEGAD
101: VVIIPAGVPR KPGMTRDDLF NINAGIVKSL CTAIAKYCPH ALVNVISNPV NSTVPIASEV FKKAGTYDEK RLFGVTTLDV VRAKTFYAGK AKVNVADVNV
201: PVVGGHAGVT ILPLFSQATP SANLSSEDIQ ALTKRTQDGG TEVVEAKAGK GSATLSMAYA GAIFADACLK GLNGVPDVVE CSFVQSTVTD LPFFASKVRL
301: GKNGVEEVLG LGALSDYEKE GLEALKPELK SSIEKGIKFA NA

Best Arabidopsis Sequence Match ( AT1G53240.1 )
(BLAST)

001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q

Arabidopsis Description

mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.