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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • plastid 2
  • mitochondrion 9
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:mitochondrion, plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
plastid: 17189339
mitochondrion: 19010998
extracellular: 19038476
mitochondrion: 23027867
extracellular: 23159799
extracellular: 24083427
extracellular: 25047395
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797
extracellular: 28232208
msms PMID: 23027867 doi
G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 25047395 doi
JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
msms PMID: 23159799 doi
SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID: 19010998 doi
S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar
Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 24083427 doi
T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
msms PMID: 17189339 doi
T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky
Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.
msms PMID: 19038476 doi
XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim
Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os01t0649100-01 Rice mitochondrion 92.06 92.06
EES19985 Sorghum mitochondrion 91.47 91.47
Zm00001d039089_P001 Maize mitochondrion 91.18 91.18
TraesCS1D01G420500.1 Wheat mitochondrion 90.29 90.03
TraesCS1A01G412900.1 Wheat plastid 90.0 89.74
TraesCS1B01G443200.1 Wheat extracellular, mitochondrion 89.41 89.15
GSMUA_AchrUn_... Banana mitochondrion, unclear 85.88 83.91
Zm00001d009640_P002 Maize mitochondrion, plasma membrane 90.0 83.15
PGSC0003DMT400039788 Potato mitochondrion 83.24 82.99
KRH55117 Soybean mitochondrion 84.12 82.9
Solyc12g014180.1.1 Tomato mitochondrion, unclear 83.24 82.75
GSMUA_Achr4P08580_001 Banana mitochondrion 84.41 82.71
Solyc07g062650.2.1 Tomato extracellular 84.12 82.66
PGSC0003DMT400032266 Potato cytosol, extracellular 83.82 82.37
KRH26205 Soybean mitochondrion 83.53 82.32
VIT_10s0003g01000.t01 Wine grape mitochondrion 85.0 82.1
Bra038112.1-P Field mustard mitochondrion 75.29 82.05
Bra030951.1-P Field mustard mitochondrion 81.47 81.23
CDY59402 Canola mitochondrion 81.18 80.94
CDY25868 Canola mitochondrion 80.88 80.65
CDY02518 Canola mitochondrion 80.88 80.65
VIT_19s0014g01640.t01 Wine grape mitochondrion 82.06 80.4
AT1G53240.1 Thale cress mitochondrion 80.59 80.35
CDY55845 Canola mitochondrion 80.59 80.35
CDY24107 Canola mitochondrion 79.71 79.71
CDY26002 Canola mitochondrion 80.29 79.59
AT3G15020.1 Thale cress mitochondrion 79.41 79.18
Bra039662.1-P Field mustard mitochondrion 79.12 79.12
CDY55842 Canola mitochondrion 30.0 75.56
Os12t0632700-01 Rice extracellular, nucleus, plastid 65.29 62.36
Os03t0773800-01 Rice plastid 63.53 61.02
HORVU1Hr1G090710.1 Barley cytosol 70.0 59.65
Os08t0434300-01 Rice plastid 59.71 57.02
Os01t0829800-01 Rice plastid 59.71 51.26
Os07t0630800-03 Rice plastid 59.41 50.0
HORVU1Hr1G090720.1 Barley peroxisome 16.18 26.07
Protein Annotations
KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37MapMan:2.3.8Gene3D:3.40.50.720Gene3D:3.90.110.10EntrezGene:4339682ProteinID:AAT69584.1
ProteinID:AAU44114.1ProteinID:BAF18303.1ProteinID:BAS95460.1ProteinID:EEE64778.1GO:GO:0003674GO:GO:0003824
GO:GO:0005975GO:GO:0006091GO:GO:0006099GO:GO:0006108GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016491GO:GO:0016615GO:GO:0016616GO:GO:0019752GO:GO:0030060
GO:GO:0055114InterPro:IPR015955EMBL:JX972152InterPro:L-lactate/malate_DHInterPro:Lactate/malate_DH_CInterPro:Lactate/malate_DH_N
InterPro:Lactate_DH/Glyco_Ohase_4_CInterPro:Malate_DH_ASInterPro:Malate_DH_type1InterPro:NAD(P)-bd_dom_sfEnsemblPlantsGene:Os05g0574400EnsemblPlants:Os05t0574400-01
PFAM:PF00056PFAM:PF02866PIRSF:PIRSF000102ScanProsite:PS00068PANTHER:PTHR11540PANTHER:PTHR11540:SF45
UniProt:Q6F361SUPFAM:SSF51735SUPFAM:SSF56327TIGRFAMs:TIGR01772UniParc:UPI00003BF567RefSeq:XP_015639465.1
SEG:seg:::::
Description
Similar to Malate dehydrogenase. (Os05t0574400-01)
Coordinates
chr5:-:28617700..28621468
Molecular Weight (calculated)
35437.9 Da
IEP (calculated)
8.299
GRAVY (calculated)
0.135
Length
340 amino acids
Sequence
(BLAST)
001: MRPSLLRYAA QALRRRDYSS AAAAAERKVA ILGAAGGIGQ PLALLMKLNP LVSSLSLYDI AGTPGVAADV SHINSPALVK GFVGEEQLGE ALEGSDVVII
101: PAGVPRKPGM TRDDLFNINA GIVKGLCTAI SKYCPNALVN MISNPVNSTV PIAAEVFKKA GTYDEKKLFG VTTLDVVRAK TFYAGKANVP VTEVNVPVVG
201: GHAGITILPL FSQATPASNA LSHEDIKALT KRTQDGGTEV VEAKAGKGSA TLSMAYAGAV FADACLKGLN GVPDVVECSF VQSTVTELPF FASKVRLGKN
301: GVEEVLGLGQ LSEFEKEGLE NLKGELKSSI EKGIKFAHAN
Best Arabidopsis Sequence Match ( AT1G53240.1 )
(BLAST)
001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q
Arabidopsis Description
mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.