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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 9
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:mitochondrion, plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
mitochondrion: 12746528
mitochondrion: 15069638
mitochondrion: 15276442
mitochondrion: 16429260
mitochondrion: 19010998
extracellular: 19038476
mitochondrion: 23027867
extracellular: 23159799
extracellular: 24083427
nucleus: 24133045
extracellular: 25047395
plasma membrane: 27800704
plastid: 27992503
extracellular: 28232208
msms PMID: 15276442 doi
BK Kristensen, P Askerlund, NV Bykova, H Egsgaard, IM Møller
Risø National Laboratory, Plant Research Department, P.O. Box 49, DK-4000 Roskilde, Denmark.
msms PMID: 24133045 doi
DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty
National Institute of Plant Genome Research, New Delhi, India.
msms PMID: 23027867 doi
G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 25047395 doi
JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.
msms PMID: 12746528 doi
JL Heazlewood, KA Howell, J Whelan, AH Millar
Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley 6009, Australia.
msms PMID: 16429260 doi
KA Howell, AH Millar, J Whelan
ARC Centre of Excellence in Plant Energy Biology, CMS Building M310, University of Western Australia, 35 Stirling Hwy, Perth, WA 6009, Australia.
msms PMID: 15069638 doi
N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu
Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.
msms PMID: 23159799 doi
SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID: 19010998 doi
S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar
Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 24083427 doi
T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
msms PMID: 19038476 doi
XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim
Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d044042_P001 Maize extracellular, mitochondrion, plastid 94.71 94.71
Os05t0574400-01 Rice extracellular 92.06 92.06
HORVU3Hr1G058460.1 Barley mitochondrion 90.0 89.74
TraesCS3D01G236200.1 Wheat mitochondrion 89.41 89.41
TraesCS3B01G265000.1 Wheat golgi, mitochondrion, unclear 89.12 89.12
TraesCS3A01G234800.2 Wheat mitochondrion 87.94 87.94
VIT_10s0003g01000.t01 Wine grape mitochondrion 87.06 84.09
KRH55117 Soybean mitochondrion 85.0 83.77
KRH26205 Soybean mitochondrion 84.41 83.19
GSMUA_AchrUn_... Banana mitochondrion, unclear 85.0 83.05
Solyc12g014180.1.1 Tomato mitochondrion, unclear 83.53 83.04
AT3G15020.1 Thale cress mitochondrion 82.94 82.7
Bra038112.1-P Field mustard mitochondrion 75.88 82.69
Bra030951.1-P Field mustard mitochondrion 82.65 82.4
PGSC0003DMT400039788 Potato mitochondrion 82.65 82.4
GSMUA_Achr4P08580_001 Banana mitochondrion 83.82 82.13
CDY59402 Canola mitochondrion 82.35 82.11
CDY25868 Canola mitochondrion 82.35 82.11
Solyc07g062650.2.1 Tomato extracellular 83.53 82.08
PGSC0003DMT400032266 Potato cytosol, extracellular 83.53 82.08
CDY55845 Canola mitochondrion 82.06 81.82
CDY02518 Canola mitochondrion 82.06 81.82
CDY26002 Canola mitochondrion 82.06 81.34
VIT_19s0014g01640.t01 Wine grape mitochondrion 82.94 81.27
AT1G53240.1 Thale cress mitochondrion 81.47 81.23
CDY24107 Canola mitochondrion 81.18 81.18
Bra039662.1-P Field mustard mitochondrion 80.88 80.88
CDY55842 Canola mitochondrion 29.71 74.81
KXG33002 Sorghum cytosol, nucleus, peroxisome 93.53 65.98
Os03t0773800-01 Rice plastid 64.41 61.86
Os12t0632700-01 Rice extracellular, nucleus, plastid 64.71 61.8
Os08t0434300-01 Rice plastid 60.59 57.87
Os01t0829800-01 Rice plastid 60.59 52.02
Os07t0630800-03 Rice plastid 61.18 51.49
Protein Annotations
KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37MapMan:2.3.8Gene3D:3.40.50.720Gene3D:3.90.110.10EntrezGene:4326249EMBL:AK104770
ProteinID:BAB55686.1ProteinID:BAC00625.1ProteinID:BAF05631.1ProteinID:BAS73428.1ProteinID:EAZ12901.1GO:GO:0003674
GO:GO:0003824GO:GO:0005975GO:GO:0006091GO:GO:0006099GO:GO:0006108GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016491GO:GO:0016615GO:GO:0016616GO:GO:0019752
GO:GO:0030060GO:GO:0055114InterPro:IPR015955InterPro:L-lactate/malate_DHInterPro:Lactate/malate_DH_CInterPro:Lactate/malate_DH_N
InterPro:Lactate_DH/Glyco_Ohase_4_CInterPro:Malate_DH_ASInterPro:Malate_DH_type1InterPro:NAD(P)-bd_dom_sfEnsemblPlantsGene:Os01g0649100EnsemblPlants:Os01t0649100-01
PFAM:PF00056PFAM:PF02866PIRSF:PIRSF000102ScanProsite:PS00068PANTHER:PTHR11540PANTHER:PTHR11540:SF45
UniProt:Q94JA2SUPFAM:SSF51735SUPFAM:SSF56327TIGRFAMs:TIGR01772UniParc:UPI00000ABD74RefSeq:XP_015621604.1
SEG:seg:::::
Description
mitochondrial malate dehydrogenase, mitochondrial MDHMalate dehydrogenase. (Os01t0649100-01);Malate dehydrogenase. (Os01t0649100-02)
Coordinates
chr1:+:26190754..26194403
Molecular Weight (calculated)
35463.0 Da
IEP (calculated)
8.851
GRAVY (calculated)
0.076
Length
340 amino acids
Sequence
(BLAST)
001: MRPSLMRSAS QVLRRRRGYS SASGQPERKV AILGAAGGIG QPLSLLMKLN PLVSSLSLYD IAGTPGVAAD VSHINAPAQV KGFMGDDQLG EALEGSDIVI
101: IPAGVPRKPG MTRDDLFNIN AGIVKNLCTA IAKYCPNALV NMISNPVNST VPIAAEVFKK AGTYDEKKLF GVTTLDVVRA KTFYAGKANV PVTDVNVPVV
201: GGHAGITILP LFSQATPATN ALSDEDIKAL TKRTQDGGTE VVEAKAGKGS ATLSMAYAGA VFANACLKGL NGVPDVVECS FVQSTVTELP FFASKVKLGK
301: NGVEEVLGLG QLSDFEKEGL ENLKGELKAS IEKGIKFANA
Best Arabidopsis Sequence Match ( AT3G15020.1 )
(BLAST)
001: MFRSMIVRSA SPVKQGLLRR GFASESVPDR KVVILGAAGG IGQPLSLLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS QVSGYMGDDD LGKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLS IAIAKYCPQA LVNMISNPVN STVPIAAEIF KKAGTYDEKK LFGVTTLDVV RARTFYAGKS DVNVAEVNVP
201: VVGGHAGITI LPLFSQASPQ ANLSDDLIRA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPNVVEC SFVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKAELKS SIEKGIKFAN Q
Arabidopsis Description
mMDH2Malate dehydrogenase 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA3]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.