Factsheet for Os01t0829800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 17189339

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0434300-01	Rice	plastid	84.6	94.1
OQU80513	Sorghum	plastid	87.37	87.82
Solyc09g091070.1.1	Tomato	nucleus	65.4	86.91
Zm00001d050409_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	86.87	86.65
Zm00001d032187_P001	Maize	plastid	85.61	86.04
TraesCS7B01G289400.1	Wheat	plastid	85.61	86.04
TraesCS7A01G386600.1	Wheat	plastid	85.1	85.53
HORVU1Hr1G081550.1	Barley	plastid	86.11	85.46
TraesCS1B01G363100.1	Wheat	plastid	85.86	85.43
TraesCS1A01G348500.1	Wheat	plastid	85.61	85.18
TraesCS1D01G351500.1	Wheat	golgi, plastid	85.61	85.18
TraesCS7D01G383100.1	Wheat	plastid, vacuole	85.61	81.69
GSMUA_Achr6P02650_001	Banana	plastid	79.55	75.72
GSMUA_Achr5P23320_001	Banana	peroxisome	59.34	74.84
VIT_17s0000g06270.t01	Wine grape	plastid	77.78	74.58
PGSC0003DMT400030247	Potato	plastid	77.27	74.27
PGSC0003DMT400065411	Potato	plastid	77.27	74.27
Bra019504.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	29.8	74.21
CDY21789	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	29.55	73.58
GSMUA_Achr7P11540_001	Banana	plastid	77.27	73.56
PGSC0003DMT400050235	Potato	plastid	76.26	73.3
Solyc03g115990.1.1	Tomato	plastid	76.26	73.3
HORVU7Hr1G091760.2	Barley	mitochondrion	85.61	73.06
AT3G47520.1	Thale cress	plastid	74.24	72.95
KRH56907	Soybean	endoplasmic reticulum	75.51	72.4
KRH03482	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	74.24	71.88
CDY61271	Canola	plastid	72.22	71.5
VIT_14s0108g00870.t01	Wine grape	plastid	77.27	71.5
Bra018137.1-P	Field mustard	plastid	71.46	70.4
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	63.38	67.11
Os07t0630800-03	Rice	plastid	64.39	63.12
CDY47402	Canola	plastid	72.47	61.06
Os01t0649100-01	Rice	mitochondrion	52.02	60.59
Os05t0574400-01	Rice	extracellular	51.26	59.71
Os12t0632700-01	Rice	extracellular, nucleus, plastid	51.77	57.58
Os03t0773800-01	Rice	plastid	49.49	55.37
CDX98040	Canola	cytosol	21.72	51.5
CDY19424	Canola	cytosol	20.71	48.24
CDX77861	Canola	plastid	32.58	45.1
AT3G53910.1	Thale cress	cytosol	11.62	42.59
Bra019790.1-P	Field mustard	plastid	37.63	38.11

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:23.1.3.4.3	Gene3D:3.40.50.720	Gene3D:3.90.110.10	EntrezGene:4327423	EMBL:AK058753
EMBL:AK101730	ProteinID:BAD73630.1	ProteinID:BAD81842.1	ProteinID:BAF06605.1	ProteinID:BAS75045.1	ProteinID:EAZ14024.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616
GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C
InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os01g0829800
EnsemblPlants:Os01t0829800-01	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR11540
PANTHER:PTHR11540:SF46	UniProt:Q5QLS8	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI000048E013
RefSeq:XP_015621579.1	RefSeq:XP_015621580.1	SEG:seg	:	:	:

Description

Similar to Malate dehydrogenase precursor (EC 1.1.1.37). (Os01t0829800-01);Similar to Malate dehydrogenase precursor (EC 1.1.1.37). (Os01t0829800-02)

Coordinates

chr1:+:35499019..35501744

Molecular Weight (calculated)

41789.4 Da

IEP (calculated)

7.896

GRAVY (calculated)

0.133

Length

396 amino acids

Sequence
(BLAST)

001: MASTVAINLI GAQAGIISKL RNCDITSYSG LKARSSISFE SRSSFLGQNA SLRSSISPRI VPKANSGSHI SPEASYKVAV LGAAGGIGQP LGLLIKMSPL
101: VSALHLYDIA NVKGVAADLS HCNTPSQVLD FTGPSELANC LKGVDVVVIP AGVPRKPGMT RDDLFNINAS IVKTLVEAVA DNCPEAFIHI ISNPVNSTVP
201: IAAEVLKQKG VYNPKKLFGV TTLDVVRANT FIAQKKNLKL IDVDVPVVGG HAGITILPLL SKTRPSVTFT NEETEELTRR IQNAGTEVVE AKAGAGSATL
301: SMAYAAARFV ESSLRALAGD PDVYECTFVQ SELTELLFFA SRVKLGKNGV ESIISSDLEG VTEYEAKALE SLKPELKASI EKGIEFVHKQ QAAATS

Best Arabidopsis Sequence Match ( AT3G47520.1 )
(BLAST)

001: MATATSASLF STVSSSYSKA SSIPHSRLQS VKFNSVPSFT GLKSTSLISG SDSSSLAKTL RGSVTKAQTS DKKPYGFKIN ASYKVAVLGA AGGIGQPLSL
101: LIKMSPLVST LHLYDIANVK GVAADLSHCN TPSQVRDFTG PSELADCLKD VNVVVIPAGV PRKPGMTRDD LFNINANIVK TLVEAVAENC PNAFIHIISN
201: PVNSTVPIAA EVLKKKGVYD PKKLFGVTTL DVVRANTFVS QKKNLKLIDV DVPVIGGHAG ITILPLLSKT KPSVNFTDEE IQELTVRIQN AGTEVVDAKA
301: GAGSATLSMA YAAARFVESS LRALDGDGDV YECSFVESTL TDLPFFASRV KIGKNGLEAV IESDLQGLTE YEQKALEALK VELKASIDKG VAFANKPAAA
401: AAN

Arabidopsis Description

MDHMalate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.