Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g091070.1.1 | Tomato | nucleus | 44.44 | 16.11 |
| GSMUA_Achr5P23320_001 | Banana | peroxisome | 41.67 | 14.33 |
| VIT_17s0000g06270.t01 | Wine grape | plastid | 52.78 | 13.8 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 47.22 | 13.64 |
| Os08t0434300-01 | Rice | plastid | 42.59 | 12.92 |
| PGSC0003DMT400050235 | Potato | plastid | 49.07 | 12.86 |
| Solyc03g115990.1.1 | Tomato | plastid | 48.15 | 12.62 |
| GSMUA_Achr7P11540_001 | Banana | plastid | 48.15 | 12.5 |
| VIT_14s0108g00870.t01 | Wine grape | plastid | 49.07 | 12.38 |
| PGSC0003DMT400065411 | Potato | plastid | 47.22 | 12.38 |
| PGSC0003DMT400030247 | Potato | plastid | 47.22 | 12.38 |
| TraesCS1B01G363100.1 | Wheat | plastid | 45.37 | 12.31 |
| TraesCS1A01G348500.1 | Wheat | plastid | 45.37 | 12.31 |
| TraesCS1D01G351500.1 | Wheat | golgi, plastid | 45.37 | 12.31 |
| HORVU1Hr1G081550.1 | Barley | plastid | 45.37 | 12.28 |
| KRH03482 | Soybean | endoplasmic reticulum, mitochondrion, nucleus, plastid | 46.3 | 12.22 |
| Zm00001d050409_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 44.44 | 12.09 |
| GSMUA_Achr6P02650_001 | Banana | plastid | 46.3 | 12.02 |
| CDY61271 | Canola | plastid | 44.44 | 12.0 |
| Bra018137.1-P | Field mustard | plastid | 44.44 | 11.94 |
| TraesCS7A01G386600.1 | Wheat | plastid | 43.52 | 11.93 |
| TraesCS7B01G289400.1 | Wheat | plastid | 43.52 | 11.93 |
| AT3G47520.1 | Thale cress | plastid | 44.44 | 11.91 |
| KRH56907 | Soybean | endoplasmic reticulum | 44.44 | 11.62 |
| Os01t0829800-01 | Rice | plastid | 42.59 | 11.62 |
| TraesCS7D01G383100.1 | Wheat | plastid, vacuole | 44.44 | 11.57 |
| OQU80513 | Sorghum | plastid | 41.67 | 11.42 |
| CDX77861 | Canola | plastid | 28.7 | 10.84 |
| Zm00001d032187_P001 | Maize | plastid | 38.89 | 10.66 |
| HORVU7Hr1G091760.2 | Barley | mitochondrion | 44.44 | 10.34 |
| AT1G53240.1 | Thale cress | mitochondrion | 32.41 | 10.26 |
| AT3G15020.1 | Thale cress | mitochondrion | 32.41 | 10.26 |
| CDY47402 | Canola | plastid | 44.44 | 10.21 |
| AT2G22780.1 | Thale cress | cytosol | 31.48 | 9.6 |
| AT5G09660.4 | Thale cress | cytosol | 17.59 | 5.23 |
Protein Annotations
| Gene3D:3.90.110.10 | MapMan:35.2 | EntrezGene:824558 | ProteinID:AEE79158.1 | ArrayExpress:AT3G53910 | EnsemblPlantsGene:AT3G53910 |
| RefSeq:AT3G53910 | TAIR:AT3G53910 | RefSeq:AT3G53910-TAIR-G | EnsemblPlants:AT3G53910.1 | TAIR:AT3G53910.1 | Unigene:At.53926 |
| ProteinID:CAB88353.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016616 | GO:GO:0055114 | InterPro:IPR015955 | InterPro:Lactate_DH/Glyco_Ohase_4_C | RefSeq:NP_190959.1 | PANTHER:PTHR11540 |
| PANTHER:PTHR11540:SF46 | UniProt:Q9M335 | UniParc:UPI0000048855 | SEG:seg | : | : |
Description
Malate dehydrogenase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9M335]
Coordinates
chr3:-:19959856..19960446
Molecular Weight (calculated)
12319.2 Da
IEP (calculated)
9.434
GRAVY (calculated)
0.170
Length
108 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLRNSDPYA MISFLKSLIR ALDGDDDVFD FAFVASSVTE LPYFATRTKI GKKRIEEVID SDLQGLAKYE ERAIKAIKPR VKVTIEKDIT LLQRTFVAIS
101: VYKLLIVV
101: VYKLLIVV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.