Factsheet for Zm00001d032187_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0434300-01	Rice	plastid	83.5	92.42
Zm00001d050409_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	90.86	90.18
Os01t0829800-01	Rice	plastid	86.04	85.61
Solyc09g091070.1.1	Tomato	nucleus	64.47	85.23
TraesCS7B01G289400.1	Wheat	plastid	83.5	83.5
TraesCS7A01G386600.1	Wheat	plastid	83.5	83.5
TraesCS1D01G351500.1	Wheat	golgi, plastid	84.26	83.42
TraesCS1A01G348500.1	Wheat	plastid	84.26	83.42
TraesCS1B01G363100.1	Wheat	plastid	84.01	83.17
HORVU1Hr1G081550.1	Barley	plastid	83.5	82.46
TraesCS7D01G383100.1	Wheat	plastid, vacuole	83.76	79.52
Bra019504.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	29.95	74.21
CDY21789	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	29.7	73.58
GSMUA_Achr5P23320_001	Banana	peroxisome	57.87	72.61
GSMUA_Achr6P02650_001	Banana	plastid	76.4	72.36
AT3G47520.1	Thale cress	plastid	73.6	71.96
VIT_17s0000g06270.t01	Wine grape	plastid	74.62	71.19
GSMUA_Achr7P11540_001	Banana	plastid	75.13	71.15
HORVU7Hr1G091760.2	Barley	mitochondrion	83.76	71.12
PGSC0003DMT400030247	Potato	plastid	73.6	70.39
PGSC0003DMT400050235	Potato	plastid	73.6	70.39
PGSC0003DMT400065411	Potato	plastid	73.6	70.39
Solyc03g115990.1.1	Tomato	plastid	73.6	70.39
CDY61271	Canola	plastid	71.32	70.25
KRH03482	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	72.33	69.68
KRH56907	Soybean	endoplasmic reticulum	72.59	69.25
Bra018137.1-P	Field mustard	plastid	70.56	69.15
VIT_14s0108g00870.t01	Wine grape	plastid	74.37	68.46
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	61.42	64.71
Zm00001d044042_P001	Maize	extracellular, mitochondrion, plastid	52.03	60.29
CDY47402	Canola	plastid	71.57	60.0
Zm00001d039089_P001	Maize	mitochondrion	51.52	59.71
Zm00001d022229_P001	Maize	plastid	56.35	57.81
Zm00001d041243_P001	Maize	mitochondrion	50.76	55.56
Zm00001d034241_P001	Maize	extracellular, plastid	49.75	54.75
Zm00001d009640_P002	Maize	mitochondrion, plasma membrane	51.02	54.62
CDX98040	Canola	cytosol	21.32	50.3
CDY19424	Canola	cytosol	19.8	45.88
CDX77861	Canola	plastid	31.98	44.06
AT3G53910.1	Thale cress	cytosol	10.66	38.89
Bra019790.1-P	Field mustard	plastid	36.8	37.08

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	EntrezGene:100193743	MapMan:23.1.3.4.3	Gene3D:3.40.50.720	Gene3D:3.90.110.10	UniProt:B4FG53
EMBL:BT036091	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099
GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615
GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH
InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf
ProteinID:ONM04545.1	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR11540
PANTHER:PTHR11540:SF46	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI00017B7046	EnsemblPlantsGene:Zm00001d032187
EnsemblPlants:Zm00001d032187_P001	EnsemblPlants:Zm00001d032187_T001	SEG:seg	:	:	:

Description

Malate dehydrogenase

Coordinates

chr1:-:216170771..216171955

Molecular Weight (calculated)

41115.6 Da

IEP (calculated)

7.897

GRAVY (calculated)

0.190

Length

394 amino acids

Sequence
(BLAST)

001: MASTVTFSLI STQAGLIHKP RNLGATSYAG LKVPSFGSES SFLGRNASLR AAVTTRIVPK AKSGSQISPH ASYKVALLGA AGGIGQPLGL LIKMSPLVSE
101: LHLYDIANVK GVAADLSHCN TPAQVLDFTG PSELASCLKG VDVVVIPAGV PRKPGMTRDD LFNINASIVK SLVEAVADNC PEAFIHIISN PVNSTVPIAA
201: EVLKQKGVYN LKKLFGVTTL DVVRANTFVA QKKNLKLIDV DVPVVGGHAG ITILPLLSKT RPSVTFTDEE AEELTKRIQN AGTEVVEAKA GAGSATLSMA
301: YAAARFVESS LRALAGDPDV YECTFIQSEA TDLPFFATRV KLGKSGVESI VSADLEGVTE CEAKALDALK AELKGSIEKG VAFASKQQEA AASV

Best Arabidopsis Sequence Match ( AT3G47520.1 )
(BLAST)

001: MATATSASLF STVSSSYSKA SSIPHSRLQS VKFNSVPSFT GLKSTSLISG SDSSSLAKTL RGSVTKAQTS DKKPYGFKIN ASYKVAVLGA AGGIGQPLSL
101: LIKMSPLVST LHLYDIANVK GVAADLSHCN TPSQVRDFTG PSELADCLKD VNVVVIPAGV PRKPGMTRDD LFNINANIVK TLVEAVAENC PNAFIHIISN
201: PVNSTVPIAA EVLKKKGVYD PKKLFGVTTL DVVRANTFVS QKKNLKLIDV DVPVIGGHAG ITILPLLSKT KPSVNFTDEE IQELTVRIQN AGTEVVDAKA
301: GAGSATLSMA YAAARFVESS LRALDGDGDV YECSFVESTL TDLPFFASRV KIGKNGLEAV IESDLQGLTE YEQKALEALK VELKASIDKG VAFANKPAAA
401: AAN

Arabidopsis Description

MDHMalate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.