Factsheet for Zm00001d041243_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

extracellular: 20408568
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016170_P001
Zm00001d031327_P009
Zm00001d052851_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22780.1	Zm00001d016170_P001	AT1G29260.1	24879895
AT2G22780.1	Zm00001d031327_P009	AT5G56290.1	24879895
AT2G22780.1	Zm00001d052851_P002	AT5G56290.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0632700-01	Rice	extracellular, nucleus, plastid	90.56	91.57
TraesCS5D01G019700.1	Wheat	nucleus	87.5	87.99
TraesCS5A01G014300.1	Wheat	nucleus, plastid	87.22	87.71
TraesCS5B01G012400.1	Wheat	cytosol	86.94	87.43
GSMUA_Achr5P02000_001	Banana	unclear	85.83	86.8
VIT_03s0088g01190.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	83.06	83.99
Solyc02g063490.2.1	Tomato	plastid	80.0	81.82
KRH28298	Soybean	endoplasmic reticulum, nucleus	80.0	81.59
PGSC0003DMT400026930	Potato	plastid	79.72	81.53
PGSC0003DMT400013106	Potato	cytosol	80.0	80.67
KRH49884	Soybean	endoplasmic reticulum, nucleus	79.17	80.06
AT2G22780.1	Thale cress	cytosol	78.33	79.66
CDY44813	Canola	cytosol	79.17	79.61
CDX85803	Canola	plastid	79.17	79.61
Bra028624.1-P	Field mustard	cytosol	79.17	79.61
KRH42019	Soybean	nucleus	78.61	79.49
Zm00001d034241_P001	Maize	extracellular, plastid	78.61	79.05
Bra009397.1-P	Field mustard	cytosol	78.33	78.77
CDY21594	Canola	cytosol	78.06	78.49
CDY25631	Canola	plastid	76.94	78.47
Bra030204.1-P	Field mustard	cytosol	76.94	78.47
CDX89514	Canola	cytosol	75.83	77.34
HORVU5Hr1G002010.1	Barley	plastid	87.78	77.26
KRH77189	Soybean	endoplasmic reticulum	61.94	77.16
KXG24112	Sorghum	plastid	95.28	76.91
KRH48807	Soybean	mitochondrion	30.56	74.32
AT5G09660.4	Thale cress	cytosol	69.72	69.15
VIT_00s0373g00040.t01	Wine grape	peroxisome	81.67	67.74
Zm00001d039089_P001	Maize	mitochondrion	61.67	65.29
Zm00001d044042_P001	Maize	extracellular, mitochondrion, plastid	61.39	65.0
CDY43430	Canola	cytosol	30.83	64.16
CDY17513	Canola	cytosol	27.22	62.82
Zm00001d009640_P002	Maize	mitochondrion, plasma membrane	61.67	60.33
Zm00001d050409_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	56.39	51.13
CDX69893	Canola	cytosol	78.33	51.09
Zm00001d032187_P001	Maize	plastid	55.56	50.76
Zm00001d022229_P001	Maize	plastid	51.39	48.18
CDY34030	Canola	mitochondrion	31.11	40.14

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	EntrezGene:100193491	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.7.3.6.5	UniProt:B4FZW5
EMBL:BT035759	EMBL:BT041589	EMBL:BT042653	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0055114
InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS
InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	ProteinID:ONM32717.1	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF21	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772
UniParc:UPI00017B7585	EnsemblPlantsGene:Zm00001d041243	EnsemblPlants:Zm00001d041243_P001	EnsemblPlants:Zm00001d041243_T001	:	:

Description

Probable malate dehydrogenase glyoxysomal

Coordinates

chr3:+:107817035..107822167

Molecular Weight (calculated)

37811.2 Da

IEP (calculated)

8.570

GRAVY (calculated)

0.162

Length

360 amino acids

Sequence
(BLAST)

001: MGQQQQGPAA RRMATLASHL RHPSVSHPQM EDVPLLRGSN CRAKGAAPGF KVAILGAAGG IGQPLALLMK MNPLVSVLHL YDVVNAPGVT ADISHMNTGA
101: VVRGFLGQPQ LENALAGMDL VIIPAGVPRK PGMTRDDLFN INAGIVRTLC EGIAKCCPNA IVNVISNPVN STVPIAAEVF KKAGTYDPKR LLGVTTLDVV
201: RANTFVGEVL GLDPREVNVP VIGGHAGITI LPLLSQVNPS CSFTSEEVKY LTSRIQNGGT EVVEAKAGAG SATLSMAYAA AKFADACLRG LRGDAGIIEC
301: SYVASQVTEL PFFASKVRLG RCGIEEILPL GPLNEFERSG LEKAKKELAE SIQKGVSFIK

Best Arabidopsis Sequence Match ( AT2G22780.1 )
(BLAST)

001: MDPNQRIARI SAHLNPPNLH NQIADGSGLN RVACRAKGGS PGFKVAILGA AGGIGQPLAM LMKMNPLVSV LHLYDVANAP GVTADISHMD TSAVVRGFLG
101: QPQLEEALTG MDLVIIPAGV PRKPGMTRDD LFNINAGIVR TLSEAIAKCC PKAIVNIISN PVNSTVPIAA EVFKKAGTFD PKKLMGVTML DVVRANTFVA
201: EVMSLDPREV EVPVVGGHAG VTILPLLSQV KPPCSFTQKE IEYLTDRIQN GGTEVVEAKA GAGSATLSMA YAAVEFADAC LRGLRGDANI VECAYVASHV
301: TELPFFASKV RLGRCGIDEV YGLGPLNEYE RMGLEKAKKE LSVSIHKGVT FAKK

Arabidopsis Description

PMDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q0WUS4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.