Factsheet for VIT_03s0088g01190.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013106	Potato	cytosol	89.33	89.08
GSMUA_Achr4P01380_001	Banana	plasma membrane	86.52	86.52
Os12t0632700-01	Rice	extracellular, nucleus, plastid	85.96	85.96
Zm00001d041243_P001	Maize	mitochondrion	83.99	83.06
TraesCS5D01G019700.1	Wheat	nucleus	83.15	82.68
TraesCS5A01G014300.1	Wheat	nucleus, plastid	82.58	82.12
TraesCS5B01G012400.1	Wheat	cytosol	82.02	81.56
VIT_00s0373g00040.t01	Wine grape	peroxisome	90.73	74.42
HORVU5Hr1G002010.1	Barley	plastid	82.58	71.88
KXG24112	Sorghum	plastid	84.55	67.49
VIT_19s0014g01640.t01	Wine grape	mitochondrion	60.11	61.67
VIT_10s0003g01000.t01	Wine grape	mitochondrion	60.11	60.8
VIT_17s0000g06270.t01	Wine grape	plastid	58.43	50.36
VIT_14s0108g00870.t01	Wine grape	plastid	60.39	50.23

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	EntrezGene:100232924	wikigene:100232924	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.7.3.6.5
UniProt:A5BEJ8	ProteinID:AAP35039	ProteinID:AAP35039.1	EMBL:AM456773	EMBL:AY194362	ProteinID:CAN65552
ProteinID:CAN65552.1	ProteinID:CBI25072	ProteinID:CBI25072.3	EMBL:FN595512	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060
GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
EntrezGene:MDHG	wikigene:MDHG	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056
PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF21	SUPFAM:SSF51735
SUPFAM:SSF56327	TIGR:TC54303	TIGRFAMs:TIGR01772	UniParc:UPI0001520EE8	ArrayExpress:VIT_03s0088g01190	EnsemblPlantsGene:VIT_03s0088g01190
EnsemblPlants:VIT_03s0088g01190.t01	unigene:Vvi.24879	unigene:Vvi.2671	RefSeq:XP_003631692	RefSeq:XP_003631692.1	:

Description

Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A5BEJ8]

Coordinates

chr3:+:9452241..9454982

Molecular Weight (calculated)

37654.0 Da

IEP (calculated)

8.657

GRAVY (calculated)

0.141

Length

356 amino acids

Sequence
(BLAST)

001: MQPTAEANQR IARLSAHLYP SVRQMEESSV LRRANCRAKG GAPGFKVAIL GAAGGIGQPL AMLMKMNPLV SVLHLYDVVN APGVTADISH MDTGAVVRGF
101: LGQPQLESAL TGMDLVIIPA GVPRKPGMTR DDLFNINAGI VRTLCEGIAK CCPNAIVNLI SNPVNSTVPI AAEVFKKAGT YDPKRLLGVT MLDVVRANTF
201: VAEVLGLDPR EVDVPVVGGH SGVTILPLLS QVKPPCSFTP EETQYLTNRI QNGGTEVVEA KAGAGSATLS MAYAAVKFAD ACLRGLRGDA GVVECTFVAS
301: QVTELPFFAT KVRLGRSGAE EIYQLGPLNE YERVGLEKAK KELAGSIAKG ISFIRK

Best Arabidopsis Sequence Match ( AT5G09660.1 )
(BLAST)

001: MEFRGDANQR IARISAHLTP QMEAKNSVIG RENCRAKGGN PGFKVAILGA AGGIGQSLSL LMKMNPLVSL LHLYDVVNAP GVTADVSHMD TGAVVRGFLG
101: AKQLEDALTG MDLVIIPAGI PRKPGMTRDD LFKINAGIVK TLCEGVAKCC PNAIVNLISN PVNSTVPIAA EVFKKAGTYD PKKLLGVTTL DVARANTFVA
201: EVLGLDPREV DVPVVGGHAG VTILPLLSQV KPPSSFTPQE IEYLTNRIQN GGTEVVEAKA GAGSATLSMA YAAAKFADAC LRGLRGDANV VECSFVASQV
301: TELAFFATKV RLGRTGAEEV YQLGPLNEYE RIGLEKAKDE LAGSIQKGVE FIRK

Arabidopsis Description

PMDH2Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:B3H560]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.