Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 2
- peroxisome 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_10s0003g01320.t01 | |
| VIT_19s0015g01940.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G22780.1 | VIT_10s0003g01320.t01 | AT1G29260.1 | 24879895 |
| AT2G22780.1 | VIT_19s0015g01940.t01 | AT5G56290.1 | 24879895 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0088g01190.t01 | Wine grape | cytosol, mitochondrion, peroxisome, plastid | 74.42 | 90.73 |
| PGSC0003DMT400026930 | Potato | plastid | 71.43 | 88.07 |
| Solyc02g063490.2.1 | Tomato | plastid | 71.2 | 87.78 |
| KRH28298 | Soybean | endoplasmic reticulum, nucleus | 69.82 | 85.84 |
| AT2G22780.1 | Thale cress | cytosol | 68.66 | 84.18 |
| Os12t0632700-01 | Rice | extracellular, nucleus, plastid | 68.89 | 83.99 |
| Bra030204.1-P | Field mustard | cytosol | 68.2 | 83.85 |
| CDY25631 | Canola | plastid | 68.2 | 83.85 |
| GSMUA_Achr4P01380_001 | Banana | plasma membrane | 68.66 | 83.71 |
| CDX89514 | Canola | cytosol | 67.74 | 83.29 |
| TraesCS5D01G019700.1 | Wheat | nucleus | 67.51 | 81.84 |
| Zm00001d041243_P001 | Maize | mitochondrion | 67.74 | 81.67 |
| TraesCS5A01G014300.1 | Wheat | nucleus, plastid | 67.28 | 81.56 |
| KRH77189 | Soybean | endoplasmic reticulum | 54.15 | 81.31 |
| TraesCS5B01G012400.1 | Wheat | cytosol | 66.82 | 81.01 |
| KRH48807 | Soybean | mitochondrion | 25.81 | 75.68 |
| HORVU5Hr1G002010.1 | Barley | plastid | 68.2 | 72.37 |
| CDY43430 | Canola | cytosol | 27.42 | 68.79 |
| KXG24112 | Sorghum | plastid | 69.59 | 67.71 |
| CDY17513 | Canola | cytosol | 24.19 | 67.31 |
| VIT_19s0014g01640.t01 | Wine grape | mitochondrion | 49.77 | 62.25 |
| VIT_10s0003g01000.t01 | Wine grape | mitochondrion | 49.08 | 60.51 |
| VIT_14s0108g00870.t01 | Wine grape | plastid | 51.38 | 52.1 |
| VIT_17s0000g06270.t01 | Wine grape | plastid | 48.62 | 51.09 |
| CDY34030 | Canola | mitochondrion | 26.27 | 40.86 |
Protein Annotations
| KEGG:00020+1.1.1.37 | KEGG:00270+1.1.1.37 | KEGG:00620+1.1.1.37 | KEGG:00630+1.1.1.37 | KEGG:00680+1.1.1.37 | KEGG:00710+1.1.1.37 |
| KEGG:00720+1.1.1.37 | EntrezGene:100260994 | wikigene:100260994 | Gene3D:3.40.50.720 | Gene3D:3.90.110.10 | MapMan:5.7.3.6.5 |
| ProteinID:CCB52396 | ProteinID:CCB52396.1 | UniProt:F6HJJ4 | EMBL:FN595777 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005975 | GO:GO:0006091 | GO:GO:0006099 | GO:GO:0006108 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016491 | GO:GO:0016615 | GO:GO:0016616 | GO:GO:0030060 | GO:GO:0055114 |
| InterPro:IPR015955 | EntrezGene:LOC100260994 | wikigene:LOC100260994 | InterPro:Lactate/malate_DH_C | InterPro:Lactate/malate_DH_N | InterPro:Lactate_DH/Glyco_Ohase_4_C |
| InterPro:Malate_DH_AS | InterPro:Malate_DH_type1 | InterPro:NAD(P)-bd_dom_sf | PFAM:PF00056 | PFAM:PF02866 | ScanProsite:PS00068 |
| PANTHER:PTHR11540 | PANTHER:PTHR11540:SF34 | SUPFAM:SSF51735 | SUPFAM:SSF56327 | TIGR:TC62348 | TIGRFAMs:TIGR01772 |
| UniParc:UPI0002108DE3 | ArrayExpress:VIT_00s0373g00040 | EnsemblPlantsGene:VIT_00s0373g00040 | EnsemblPlants:VIT_00s0373g00040.t01 | unigene:Vvi.18967 | RefSeq:XP_002263670 |
| RefSeq:XP_002263670.2 | RefSeq:XP_002263670.3 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrUn:+:26277395..26281907
Molecular Weight (calculated)
46351.3 Da
IEP (calculated)
7.406
GRAVY (calculated)
0.060
Length
434 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIGEREVDG DLGFRIGLFE LGPKDQVPRF PTILGKSSGL TSSLTSSYVL CIYLFLPTAH SWQLLNTDRL PRRPGEETMH PTSDANQRIA RISAHLQPSN
101: FQMGESSGLS RENCRAKGGA PGFKVAILGA AGGIGQPLAM LMKMNPLVSV LHLYDVVNTP GVTSDISHMD TGAVVRGFLG QQQLEDALTG MDLVIIPAGV
201: PRKPGMTRDD LFNINAGIVK TLCEGIAKCC PNAIVNLISN PVNSTVPIAA EVFKKAGTFD PKRLLGVTML DVVRANTFVA EVLGLDPREV DVPVVGGHAG
301: VTILPLLSQV KPPCSFTPEE IDYLTARIQN GGTEVVEAKA GAGSATLSMA YAAVKFADTC LRGLRGDAGV IQCAYVFSQV TELPFFASKV RLGRTGAEEI
401: YPLGPLNEYE RAGLEKAKKE LASSIQKGIS FIRK
101: FQMGESSGLS RENCRAKGGA PGFKVAILGA AGGIGQPLAM LMKMNPLVSV LHLYDVVNTP GVTSDISHMD TGAVVRGFLG QQQLEDALTG MDLVIIPAGV
201: PRKPGMTRDD LFNINAGIVK TLCEGIAKCC PNAIVNLISN PVNSTVPIAA EVFKKAGTFD PKRLLGVTML DVVRANTFVA EVLGLDPREV DVPVVGGHAG
301: VTILPLLSQV KPPCSFTPEE IDYLTARIQN GGTEVVEAKA GAGSATLSMA YAAVKFADTC LRGLRGDAGV IQCAYVFSQV TELPFFASKV RLGRTGAEEI
401: YPLGPLNEYE RAGLEKAKKE LASSIQKGIS FIRK
001: MDPNQRIARI SAHLNPPNLH NQIADGSGLN RVACRAKGGS PGFKVAILGA AGGIGQPLAM LMKMNPLVSV LHLYDVANAP GVTADISHMD TSAVVRGFLG
101: QPQLEEALTG MDLVIIPAGV PRKPGMTRDD LFNINAGIVR TLSEAIAKCC PKAIVNIISN PVNSTVPIAA EVFKKAGTFD PKKLMGVTML DVVRANTFVA
201: EVMSLDPREV EVPVVGGHAG VTILPLLSQV KPPCSFTQKE IEYLTDRIQN GGTEVVEAKA GAGSATLSMA YAAVEFADAC LRGLRGDANI VECAYVASHV
301: TELPFFASKV RLGRCGIDEV YGLGPLNEYE RMGLEKAKKE LSVSIHKGVT FAKK
101: QPQLEEALTG MDLVIIPAGV PRKPGMTRDD LFNINAGIVR TLSEAIAKCC PKAIVNIISN PVNSTVPIAA EVFKKAGTFD PKKLMGVTML DVVRANTFVA
201: EVMSLDPREV EVPVVGGHAG VTILPLLSQV KPPCSFTQKE IEYLTDRIQN GGTEVVEAKA GAGSATLSMA YAAVEFADAC LRGLRGDANI VECAYVASHV
301: TELPFFASKV RLGRCGIDEV YGLGPLNEYE RMGLEKAKKE LSVSIHKGVT FAKK
Arabidopsis Description
PMDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q0WUS4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.