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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • cytosol 1
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, peroxisome, plastid
BaCelLo:plastid
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:mitochondrion, plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400022498
PGSC0003DMT400023242
PGSC0003DMT400029209
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G22780.1 PGSC0003DMT400022498 AT1G29260.1 24879895
AT2G22780.1 PGSC0003DMT400023242 AT1G29260.1 24879895
AT2G22780.1 PGSC0003DMT400040141 AT3G46090.1 17259181
AT2G22780.1 PGSC0003DMT400040142 AT3G46090.1 17259181
AT2G22780.1 PGSC0003DMT400040143 AT3G46090.1 17259181
AT2G22780.1 PGSC0003DMT400040144 AT3G46090.1 17259181
AT2G22780.1 PGSC0003DMT400040206 AT3G46090.1 17259181
AT2G22780.1 PGSC0003DMT400040207 AT3G46090.1 17259181
AT2G22780.1 PGSC0003DMT400077934 AT3G46090.1 17259181
AT2G22780.1 PGSC0003DMT400029209 AT5G56290.1 24879895
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc02g063490.2.1 Tomato plastid 98.58 98.58
Bra030204.1-P Field mustard cytosol 83.81 83.57
CDY25631 Canola plastid 83.81 83.57
KRH28298 Soybean endoplasmic reticulum, nucleus 83.81 83.57
AT2G22780.1 Thale cress cytosol 83.24 82.77
CDX89514 Canola cytosol 82.95 82.72
PGSC0003DMT400013106 Potato cytosol 83.52 82.35
Os12t0632700-01 Rice extracellular, nucleus, plastid 82.1 81.18
GSMUA_Achr4P01380_001 Banana plasma membrane 82.1 81.18
KRH77189 Soybean endoplasmic reticulum 65.62 79.93
Zm00001d041243_P001 Maize mitochondrion 81.53 79.72
TraesCS5D01G019700.1 Wheat nucleus 80.97 79.61
TraesCS5A01G014300.1 Wheat nucleus, plastid 80.68 79.33
TraesCS5B01G012400.1 Wheat cytosol 79.83 78.49
KRH48807 Soybean mitochondrion 32.39 77.03
VIT_00s0373g00040.t01 Wine grape peroxisome 88.07 71.43
HORVU5Hr1G002010.1 Barley plastid 80.4 69.19
CDY43430 Canola cytosol 33.81 68.79
CDY17513 Canola cytosol 30.11 67.95
KXG24112 Sorghum plastid 82.39 65.02
PGSC0003DMT400032266 Potato cytosol, extracellular 60.8 61.85
PGSC0003DMT400039788 Potato mitochondrion 59.38 61.29
PGSC0003DMT400050235 Potato plastid 58.52 50.0
PGSC0003DMT400030247 Potato plastid 57.67 49.27
PGSC0003DMT400065411 Potato plastid 57.67 49.27
CDY34030 Canola mitochondrion 33.24 41.94
Protein Annotations
KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37EntrezGene:102595203Gene3D:3.40.50.720Gene3D:3.90.110.10MapMan:5.7.3.6.5GO:GO:0003674
GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005777
GO:GO:0005975GO:GO:0006091GO:GO:0006099GO:GO:0006108GO:GO:0006629GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0009507GO:GO:0009536GO:GO:0009987GO:GO:0016491
GO:GO:0016615GO:GO:0016616GO:GO:0019752GO:GO:0030060GO:GO:0031998GO:GO:0055114
GO:GO:0080093InterPro:IPR015955InterPro:L-lactate/malate_DHInterPro:Lactate/malate_DH_CInterPro:Lactate/malate_DH_NInterPro:Lactate_DH/Glyco_Ohase_4_C
UniProt:M1ANW0InterPro:Malate_DH_ASInterPro:Malate_DH_type1InterPro:NAD(P)-bd_dom_sfPFAM:PF00056PFAM:PF02866
EnsemblPlantsGene:PGSC0003DMG400010386PGSC:PGSC0003DMG400010386EnsemblPlants:PGSC0003DMT400026930PIRSF:PIRSF000102ScanProsite:PS00068PANTHER:PTHR11540
PANTHER:PTHR11540:SF34SUPFAM:SSF51735SUPFAM:SSF56327TIGRFAMs:TIGR01772UniParc:UPI0002949E40RefSeq:XP_006346882.1
Description
Malate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400010386]
Coordinates
chr2:-:22414635..22419995
Molecular Weight (calculated)
36948.2 Da
IEP (calculated)
8.061
GRAVY (calculated)
0.215
Length
352 amino acids
Sequence
(BLAST)
001: MQRSAERIAT ISAHLNPSTS PHQMEGLSAA NCRAKGGSPG FKVAILGAAG GIGQPLAMLM KMNPLVSVLH LYDVANTPGV TADISHMDTG AVVRGFLGPQ
101: QLEDALTGMD LVVIPAGVPR KPGMTRDDLF NINAGIVKTL CEGIAKCCPK AIVNIISNPV NSTVPIAAEV FKMAGTFDPR RLLGVTMLDV VRANTFVAEV
201: LGLDPREVDV PVVGGHAGVT ILPLLSQIKP PCSFTPAETE YLTSRIQNGG TEVVEAKAGA GSATLSMAYA AVKFADACLH GLRGDAAIIQ CAFVFSQVTE
301: LPFFASKVRL GRSGVEEIFP LGPLNEYERT GLEKAKKELA TSIQKGVGFV KK
Best Arabidopsis Sequence Match ( AT2G22780.1 )
(BLAST)
001: MDPNQRIARI SAHLNPPNLH NQIADGSGLN RVACRAKGGS PGFKVAILGA AGGIGQPLAM LMKMNPLVSV LHLYDVANAP GVTADISHMD TSAVVRGFLG
101: QPQLEEALTG MDLVIIPAGV PRKPGMTRDD LFNINAGIVR TLSEAIAKCC PKAIVNIISN PVNSTVPIAA EVFKKAGTFD PKKLMGVTML DVVRANTFVA
201: EVMSLDPREV EVPVVGGHAG VTILPLLSQV KPPCSFTQKE IEYLTDRIQN GGTEVVEAKA GAGSATLSMA YAAVEFADAC LRGLRGDANI VECAYVASHV
301: TELPFFASKV RLGRCGIDEV YGLGPLNEYE RMGLEKAKKE LSVSIHKGVT FAKK
Arabidopsis Description
PMDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q0WUS4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.