Factsheet for Solyc02g063490.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g062940.2.1
Solyc06g075780.1.1
Solyc10g005650.2.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22780.1	Solyc03g062940.2.1	AT1G29260.1	24879895
AT2G22780.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT2G22780.1	Solyc11g073060.1.1	AT3G46090.1	17259181
AT2G22780.1	Solyc10g005650.2.1	AT5G56290.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026930	Potato	plastid	98.58	98.58
Bra030204.1-P	Field mustard	cytosol	83.81	83.57
CDY25631	Canola	plastid	83.81	83.57
KRH28298	Soybean	endoplasmic reticulum, nucleus	83.81	83.57
AT2G22780.1	Thale cress	cytosol	83.24	82.77
CDX89514	Canola	cytosol	82.95	82.72
GSMUA_Achr4P01380_001	Banana	plasma membrane	82.67	81.74
Os12t0632700-01	Rice	extracellular, nucleus, plastid	82.1	81.18
Zm00001d041243_P001	Maize	mitochondrion	81.82	80.0
KRH77189	Soybean	endoplasmic reticulum	65.62	79.93
TraesCS5D01G019700.1	Wheat	nucleus	80.68	79.33
TraesCS5A01G014300.1	Wheat	nucleus, plastid	80.4	79.05
TraesCS5B01G012400.1	Wheat	cytosol	79.55	78.21
KRH48807	Soybean	mitochondrion	32.39	77.03
VIT_00s0373g00040.t01	Wine grape	peroxisome	87.78	71.2
HORVU5Hr1G002010.1	Barley	plastid	80.11	68.95
CDY43430	Canola	cytosol	33.52	68.21
CDY17513	Canola	cytosol	29.83	67.31
KXG24112	Sorghum	plastid	82.1	64.8
Solyc07g062650.2.1	Tomato	extracellular	61.08	62.14
Solyc12g014180.1.1	Tomato	mitochondrion, unclear	59.38	61.11
Solyc09g091070.1.1	Tomato	nucleus	51.42	60.74
Solyc03g115990.1.1	Tomato	plastid	58.24	49.76
CDY34030	Canola	mitochondrion	33.24	41.94

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.7.3.6.5	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0005975
GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615
GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0031998	GO:GO:0055114	GO:GO:0080093
InterPro:IPR015955	UniProt:K4B6N4	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF34	SUPFAM:SSF51735	SUPFAM:SSF56327	EnsemblPlantsGene:Solyc02g063490.2
EnsemblPlants:Solyc02g063490.2.1	TIGRFAMs:TIGR01772	UniParc:UPI0002768672	:	:	:

Description

Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4B6N4]

Coordinates

chr2:-:35565022..35570176

Molecular Weight (calculated)

36862.1 Da

IEP (calculated)

8.070

GRAVY (calculated)

0.200

Length

352 amino acids

Sequence
(BLAST)

001: MQRSAERIAT ISAHLNPSPS SHQMEGLSAA NCRAKGGSPG FKVAILGAAG GIGQPLAMLM KMNPLVSVLH LYDVANTPGV TADISHMDTG AVVRGFLGPQ
101: QLEDALTGMD LVIIPAGVPR KPGMTRDDLF NINAGIVKTL CEGIAKCCPK AIVNIISNPV NSTVPIAAEV FKMAGTFDPR RLLGVTMLDV VRANTFVAEV
201: LGLDPREVDV PVVGGHAGVT ILPLLSQIKP PCSFTPAETE HLTSRIQNGG TEVVEAKAGA GSATLSMAYA AVKFADACLH GLRGDAAIIQ CAFVSSQVTE
301: LPFFASKVRL GRSGVEEIFP LGPLNEYERT GLEKAKKELA TSIQKGVGFV KK

Best Arabidopsis Sequence Match ( AT2G22780.1 )
(BLAST)

001: MDPNQRIARI SAHLNPPNLH NQIADGSGLN RVACRAKGGS PGFKVAILGA AGGIGQPLAM LMKMNPLVSV LHLYDVANAP GVTADISHMD TSAVVRGFLG
101: QPQLEEALTG MDLVIIPAGV PRKPGMTRDD LFNINAGIVR TLSEAIAKCC PKAIVNIISN PVNSTVPIAA EVFKKAGTFD PKKLMGVTML DVVRANTFVA
201: EVMSLDPREV EVPVVGGHAG VTILPLLSQV KPPCSFTQKE IEYLTDRIQN GGTEVVEAKA GAGSATLSMA YAAVEFADAC LRGLRGDANI VECAYVASHV
301: TELPFFASKV RLGRCGIDEV YGLGPLNEYE RMGLEKAKKE LSVSIHKGVT FAKK

Arabidopsis Description

PMDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q0WUS4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.