CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90175
CDX99799
CDY11941
CDY20736
CDY36789
CDY43325
CDY49390
CDY50786
CDY66434
CDY66435
CDY67858

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22780.1	CDX90175	AT1G29260.1	24879895
AT2G22780.1	CDX99799	AT1G29260.1	24879895
AT2G22780.1	CDY43325	AT1G29260.1	24879895
AT2G22780.1	CDY50786	AT1G29260.1	24879895
AT2G22780.1	CDY11941	AT5G56290.1	24879895
AT2G22780.1	CDY20736	AT5G56290.1	24879895
AT2G22780.1	CDY36789	AT5G56290.1	24879895
AT2G22780.1	CDY49390	AT5G56290.1	24879895
AT2G22780.1	CDY66434	AT5G56290.1	24879895
AT2G22780.1	CDY66435	AT5G56290.1	24879895
AT2G22780.1	CDY67858	AT5G56290.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17513	Canola	cytosol	81.5	90.38
CDY55842	Canola	mitochondrion	32.95	42.22
CDY25631	Canola	plastid	82.66	40.51
KRH77189	Soybean	endoplasmic reticulum	67.05	40.14
CDX89514	Canola	cytosol	81.5	39.94
AT2G22780.1	Thale cress	cytosol	79.19	38.7
PGSC0003DMT400026930	Potato	plastid	68.79	33.81
Solyc02g063490.2.1	Tomato	plastid	68.21	33.52
KRH28298	Soybean	endoplasmic reticulum, nucleus	68.21	33.43
CDY21594	Canola	cytosol	68.79	33.24
CDX85803	Canola	plastid	68.79	33.24
CDY44813	Canola	cytosol	68.79	33.24
Os12t0632700-01	Rice	extracellular, nucleus, plastid	67.63	32.87
GSMUA_Achr4P01380_001	Banana	plasma membrane	67.63	32.87
TraesCS5A01G014300.1	Wheat	nucleus, plastid	66.47	32.12
TraesCS5B01G012400.1	Wheat	cytosol	66.47	32.12
TraesCS5D01G019700.1	Wheat	nucleus	65.9	31.84
Zm00001d041243_P001	Maize	mitochondrion	64.16	30.83
CDY19424	Canola	cytosol	30.06	30.59
CDY34030	Canola	mitochondrion	48.55	30.11
KRH48807	Soybean	mitochondrion	25.43	29.73
CDX98040	Canola	cytosol	27.75	28.74
HORVU5Hr1G002010.1	Barley	plastid	66.47	28.12
VIT_00s0373g00040.t01	Wine grape	peroxisome	68.79	27.42
CDY24107	Canola	mitochondrion	50.87	25.88
CDY55845	Canola	mitochondrion	50.87	25.81
CDY59402	Canola	mitochondrion	50.87	25.81
CDY25868	Canola	mitochondrion	50.87	25.81
CDY02518	Canola	mitochondrion	50.87	25.81
CDY26002	Canola	mitochondrion	50.87	25.66
KXG24112	Sorghum	plastid	64.74	25.11
CDY21789	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	21.97	23.9
CDX69893	Canola	cytosol	69.36	21.74
CDY61271	Canola	plastid	48.55	21.0
CDY47402	Canola	plastid	48.55	17.87
CDX77861	Canola	plastid	17.92	10.84

Protein Annotations

Gene3D:3.90.110.10	MapMan:35.1	GO:A0A078HY29	UniProt:A0A078HY29	EnsemblPlants:CDY43430	ProteinID:CDY43430
ProteinID:CDY43430.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016616	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00076650001	InterPro:IPR015955	InterPro:Lactate/malate_DH_C	InterPro:Lactate_DH/Glyco_Ohase_4_C
PFAM:PF02866	PANTHER:PTHR11540	PANTHER:PTHR11540:SF21	SUPFAM:SSF56327	UniParc:UPI0004EECE50	SEG:seg

Description

BnaC07g14970DBnaC07g14970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HY29]

Coordinates

chrLK032556:-:241465..242599

Molecular Weight (calculated)

18903.3 Da

IEP (calculated)

8.740

GRAVY (calculated)

0.045

Length

173 amino acids

Sequence
(BLAST)

001: MGDKFDLKKL MGVTMLDAVS RANTFVAEVM SRNPREVVVP VVGGHARVTI LPLISQVKPP CSFTQKEIEY LTDRMENGGI EVVKAKSGAV KFADACLKGL
101: RGDANIVECA FVAAHVTELL FFASKVRLGR CGVDEVYGLG PLNEYERMGL EKAKKELEGV LRKVLALCRS KDS

Best Arabidopsis Sequence Match ( AT2G22780.1 )
(BLAST)

001: MDPNQRIARI SAHLNPPNLH NQIADGSGLN RVACRAKGGS PGFKVAILGA AGGIGQPLAM LMKMNPLVSV LHLYDVANAP GVTADISHMD TSAVVRGFLG
101: QPQLEEALTG MDLVIIPAGV PRKPGMTRDD LFNINAGIVR TLSEAIAKCC PKAIVNIISN PVNSTVPIAA EVFKKAGTFD PKKLMGVTML DVVRANTFVA
201: EVMSLDPREV EVPVVGGHAG VTILPLLSQV KPPCSFTQKE IEYLTDRIQN GGTEVVEAKA GAGSATLSMA YAAVEFADAC LRGLRGDANI VECAYVASHV
301: TELPFFASKV RLGRCGIDEV YGLGPLNEYE RMGLEKAKKE LSVSIHKGVT FAKK

Arabidopsis Description

PMDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q0WUS4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.