Factsheet for GSMUA_Achr5P02000_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 6
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0632700-01	Rice	extracellular, nucleus, plastid	88.76	88.76
TraesCS5D01G019700.1	Wheat	nucleus	87.36	86.87
TraesCS5A01G014300.1	Wheat	nucleus, plastid	86.8	86.31
TraesCS5B01G012400.1	Wheat	cytosol	86.52	86.03
Zm00001d041243_P001	Maize	mitochondrion	86.8	85.83
GSMUA_Achr4P01380_001	Banana	plasma membrane	85.39	85.39
HORVU5Hr1G002010.1	Barley	plastid	87.08	75.79
KXG24112	Sorghum	plastid	87.08	69.51
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	61.52	62.93
GSMUA_Achr4P08580_001	Banana	mitochondrion	60.96	62.54
GSMUA_Achr5P23320_001	Banana	peroxisome	46.63	52.87
GSMUA_Achr6P02650_001	Banana	plastid	59.27	50.72
GSMUA_Achr7P11540_001	Banana	plastid	57.58	49.28
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	48.03	45.72

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.7.3.6.5	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060
GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr5G02000_001	EnsemblPlants:GSMUA_Achr5P02000_001	EnsemblPlants:GSMUA_Achr5T02000_001	InterPro:IPR015955	InterPro:L-lactate/malate_DH
InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	UniProt:M0SUX9	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR11540
PANTHER:PTHR11540:SF21	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI0002964884	:

Description

Malate dehydrogenase, glyoxysomal [Source:GMGC_GENE;Acc:GSMUA_Achr5G02000_001]

Coordinates

chr5:+:1242033..1248850

Molecular Weight (calculated)

37428.8 Da

IEP (calculated)

8.574

GRAVY (calculated)

0.205

Length

356 amino acids

Sequence
(BLAST)

001: MQPGSEASRR IARINSHLHP PVSQMEETSL LRRANCRSKG GASGFKVAIL GAAGGIGQPL ALLMKMNPLV SVLHLYDVVN APGVTADISH MNTGAVVRGF
101: LGQPQLEDAL AGMDLVIIPA GVPRKPGMTR DDLFNINAGI VKTLCEGIVK CCPKAIVNVI SNPVNSTVPI AAEVFKKAGT YDSKRLLGVT MLDVVRANTF
201: VAEVLGIDPR DVNVPVVGGH AGVTILPLLS QVNPPCSFTP EEISYLTNRI QNGGTEVVEA KAGAGSATLS MAYAAAKFAD ACLRGLRGDA GVVECSFVAS
301: QVTELPFFAS KVRLGRCGVE EVLPLGPLNE FERAGLEKAK KELAVSIQKG VSFIHK

Best Arabidopsis Sequence Match ( AT2G22780.1 )
(BLAST)

001: MDPNQRIARI SAHLNPPNLH NQIADGSGLN RVACRAKGGS PGFKVAILGA AGGIGQPLAM LMKMNPLVSV LHLYDVANAP GVTADISHMD TSAVVRGFLG
101: QPQLEEALTG MDLVIIPAGV PRKPGMTRDD LFNINAGIVR TLSEAIAKCC PKAIVNIISN PVNSTVPIAA EVFKKAGTFD PKKLMGVTML DVVRANTFVA
201: EVMSLDPREV EVPVVGGHAG VTILPLLSQV KPPCSFTQKE IEYLTDRIQN GGTEVVEAKA GAGSATLSMA YAAVEFADAC LRGLRGDANI VECAYVASHV
301: TELPFFASKV RLGRCGIDEV YGLGPLNEYE RMGLEKAKKE LSVSIHKGVT FAKK

Arabidopsis Description

PMDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q0WUS4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.