CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid, nucleus

Predictor Summary:

plastid 10
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56907	Soybean	endoplasmic reticulum	94.62	93.7
Solyc09g091070.1.1	Tomato	nucleus	64.06	87.92
Os08t0434300-01	Rice	plastid	69.44	79.78
PGSC0003DMT400065411	Potato	plastid	79.95	79.37
PGSC0003DMT400030247	Potato	plastid	79.95	79.37
PGSC0003DMT400050235	Potato	plastid	79.46	78.88
Solyc03g115990.1.1	Tomato	plastid	79.22	78.64
VIT_17s0000g06270.t01	Wine grape	plastid	78.73	77.97
CDY61271	Canola	plastid	75.31	77.0
AT3G47520.1	Thale cress	plastid	75.55	76.67
VIT_14s0108g00870.t01	Wine grape	plastid	80.2	76.64
Bra018137.1-P	Field mustard	plastid	74.57	75.87
Bra019504.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	29.34	75.47
CDY21789	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	29.34	75.47
TraesCS1A01G348500.1	Wheat	plastid	72.86	74.87
Zm00001d050409_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	72.37	74.56
Os01t0829800-01	Rice	plastid	71.88	74.24
TraesCS1D01G351500.1	Wheat	golgi, plastid	72.13	74.12
TraesCS1B01G363100.1	Wheat	plastid	72.13	74.12
OQU80513	Sorghum	plastid	71.15	73.86
TraesCS7B01G289400.1	Wheat	plastid	70.9	73.6
GSMUA_Achr7P11540_001	Banana	plastid	74.82	73.56
HORVU1Hr1G081550.1	Barley	plastid	71.64	73.43
TraesCS7A01G386600.1	Wheat	plastid	70.66	73.35
GSMUA_Achr6P02650_001	Banana	plastid	74.57	73.32
Zm00001d032187_P001	Maize	plastid	69.68	72.33
GSMUA_Achr5P23320_001	Banana	peroxisome	55.5	72.29
TraesCS7D01G383100.1	Wheat	plastid, vacuole	70.66	69.64
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	61.61	67.38
CDY47402	Canola	plastid	74.82	65.11
HORVU7Hr1G091760.2	Barley	mitochondrion	71.88	63.36
KRH26205	Soybean	mitochondrion	52.32	62.03
KRH55117	Soybean	mitochondrion	51.83	61.45
KRH28298	Soybean	endoplasmic reticulum, nucleus	52.08	60.34
KRH49884	Soybean	endoplasmic reticulum, nucleus	50.86	58.43
KRH77189	Soybean	endoplasmic reticulum	41.08	58.13
KRH42019	Soybean	nucleus	50.37	57.87
KRH48807	Soybean	mitochondrion	20.78	57.43
CDX77861	Canola	plastid	32.76	46.85
AT3G53910.1	Thale cress	cytosol	12.22	46.3

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	EntrezGene:100814078	MapMan:23.1.3.4.3	Gene3D:3.40.50.720	Gene3D:3.90.110.10	EMBL:ACUP02010348
EMBL:BT096689	UniProt:C6TGD9	EnsemblPlantsGene:GLYMA_17G100600	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955
EnsemblPlants:KRH03482	ProteinID:KRH03482	ProteinID:KRH03482.1	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	ScanProsite:PS00068
PANTHER:PTHR11540	PANTHER:PTHR11540:SF46	MetaCyc:PWY-1622	MetaCyc:PWY-5392	MetaCyc:PWY-561	MetaCyc:PWY-5690
MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7115	MetaCyc:PWY-7383	SUPFAM:SSF51735
SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI0001B16AC3	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:-:7917204..7919329

Molecular Weight (calculated)

43149.7 Da

IEP (calculated)

8.114

GRAVY (calculated)

0.033

Length

409 amino acids

Sequence
(BLAST)

001: MAAAPAATFA IGTTGSLGQR GSSLPQSKSF GLKFNSLNHL KSFCGLKAMS SVRCESESSF FGNKTGAALR ASFASKAQKE NNHNSQPQAS YKVAVLGAAG
101: GIGQPLSLLI KMSPLVSNLH LYDIANVKGV AADISHCNTP SQVRDFTGAS ELPNCLKDVN VVVIPAGVPR KPGMTRDDLF NINAGIVRDL VSAVADYCPD
201: AFVQIISNPV NSTVPIAAEV LKQKGVYDPK KLFGVTTLDV VRANTFVAQR KNLKLIDVDV PVVGGHAGIT ILPLLSKTRP SASFTDEEID ELTVRIQNAG
301: TEVVEAKAGT GSATLSMAYA AARFVESSLR ALDGDGDVYE CSFVESNLTD LPFFASRVKL GRTGVEALIP SDLQGLTDYE QKALEALKPE LKASIEKGIA
401: FAQKQTVAA

Best Arabidopsis Sequence Match ( AT3G47520.1 )
(BLAST)

001: MATATSASLF STVSSSYSKA SSIPHSRLQS VKFNSVPSFT GLKSTSLISG SDSSSLAKTL RGSVTKAQTS DKKPYGFKIN ASYKVAVLGA AGGIGQPLSL
101: LIKMSPLVST LHLYDIANVK GVAADLSHCN TPSQVRDFTG PSELADCLKD VNVVVIPAGV PRKPGMTRDD LFNINANIVK TLVEAVAENC PNAFIHIISN
201: PVNSTVPIAA EVLKKKGVYD PKKLFGVTTL DVVRANTFVS QKKNLKLIDV DVPVIGGHAG ITILPLLSKT KPSVNFTDEE IQELTVRIQN AGTEVVDAKA
301: GAGSATLSMA YAAARFVESS LRALDGDGDV YECSFVESTL TDLPFFASRV KIGKNGLEAV IESDLQGLTE YEQKALEALK VELKASIDKG VAFANKPAAA
401: AAN

Arabidopsis Description

MDHMalate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.