Factsheet for AT3G47520.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g091070.1.1	Tomato	nucleus	64.27	86.91
Bra019504.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	32.01	81.13
CDY21789	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	32.01	81.13
Os08t0434300-01	Rice	plastid	70.47	79.78
Zm00001d050409_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	74.44	75.57
KRH03482	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	76.67	75.55
OQU80513	Sorghum	plastid	73.45	75.13
Solyc03g115990.1.1	Tomato	plastid	76.67	75.0
PGSC0003DMT400050235	Potato	plastid	76.67	75.0
KRH56907	Soybean	endoplasmic reticulum	76.43	74.58
VIT_17s0000g06270.t01	Wine grape	plastid	76.18	74.33
Os01t0829800-01	Rice	plastid	72.95	74.24
GSMUA_Achr5P23320_001	Banana	peroxisome	57.57	73.89
TraesCS7B01G289400.1	Wheat	plastid	72.21	73.86
Zm00001d032187_P001	Maize	plastid	71.96	73.6
TraesCS1A01G348500.1	Wheat	plastid	72.46	73.37
TraesCS1B01G363100.1	Wheat	plastid	72.46	73.37
TraesCS7A01G386600.1	Wheat	plastid	71.46	73.1
PGSC0003DMT400030247	Potato	plastid	74.69	73.06
PGSC0003DMT400065411	Potato	plastid	74.69	73.06
TraesCS1D01G351500.1	Wheat	golgi, plastid	71.96	72.86
HORVU1Hr1G081550.1	Barley	plastid	71.96	72.68
VIT_14s0108g00870.t01	Wine grape	plastid	75.19	70.79
GSMUA_Achr6P02650_001	Banana	plastid	72.95	70.67
GSMUA_Achr7P11540_001	Banana	plastid	72.21	69.95
TraesCS7D01G383100.1	Wheat	plastid, vacuole	71.96	69.88
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	59.31	63.9
HORVU7Hr1G091760.2	Barley	mitochondrion	71.96	62.5
AT1G53240.1	Thale cress	mitochondrion	50.62	59.82
AT3G15020.1	Thale cress	mitochondrion	49.63	58.65
AT2G22780.1	Thale cress	cytosol	50.87	57.91
AT5G09660.4	Thale cress	cytosol	45.66	50.69
AT3G53910.1	Thale cress	cytosol	11.91	44.44

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:23.1.3.4.3	Gene3D:3.40.50.720	Gene3D:3.90.110.10	EntrezGene:823906	ProteinID:AEE78292.1
ArrayExpress:AT3G47520	EnsemblPlantsGene:AT3G47520	RefSeq:AT3G47520	TAIR:AT3G47520	RefSeq:AT3G47520-TAIR-G	EnsemblPlants:AT3G47520.1
TAIR:AT3G47520.1	EMBL:AY128281	EMBL:BT000621	ProteinID:CAB61978.1	GO:GO:0000003	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005773	GO:GO:0005774	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099
GO:GO:0006108	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008746
GO:GO:0009409	GO:GO:0009507	GO:GO:0009532	GO:GO:0009536	GO:GO:0009570	GO:GO:0009628
GO:GO:0009719	GO:GO:0009735	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009941
GO:GO:0009987	GO:GO:0010319	GO:GO:0016020	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616
GO:GO:0030060	GO:GO:0048046	GO:GO:0055114	InterPro:IPR015955	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N
InterPro:Lactate_DH/Glyco_Ohase_4_C	Symbol:MDH	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	RefSeq:NP_190336.1
PFAM:PF00056	PFAM:PF02866	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007131	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009001	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	ScanProsite:PS00068
PANTHER:PTHR11540	PANTHER:PTHR11540:SF46	UniProt:Q9SN86	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772
UniParc:UPI00000AC228	EMBL:Y13987	SEG:seg	:	:	:

Description

MDHMalate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86]

Coordinates

chr3:+:17512816..17515155

Molecular Weight (calculated)

42407.9 Da

IEP (calculated)

8.811

GRAVY (calculated)

0.078

Length

403 amino acids

Sequence
(BLAST)

001: MATATSASLF STVSSSYSKA SSIPHSRLQS VKFNSVPSFT GLKSTSLISG SDSSSLAKTL RGSVTKAQTS DKKPYGFKIN ASYKVAVLGA AGGIGQPLSL
101: LIKMSPLVST LHLYDIANVK GVAADLSHCN TPSQVRDFTG PSELADCLKD VNVVVIPAGV PRKPGMTRDD LFNINANIVK TLVEAVAENC PNAFIHIISN
201: PVNSTVPIAA EVLKKKGVYD PKKLFGVTTL DVVRANTFVS QKKNLKLIDV DVPVIGGHAG ITILPLLSKT KPSVNFTDEE IQELTVRIQN AGTEVVDAKA
301: GAGSATLSMA YAAARFVESS LRALDGDGDV YECSFVESTL TDLPFFASRV KIGKNGLEAV IESDLQGLTE YEQKALEALK VELKASIDKG VAFANKPAAA
401: AAN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.