Factsheet for TraesCS1A01G412900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 6
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, peroxisome
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	peroxisome

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G420500.1	Wheat	mitochondrion	99.41	99.41
TraesCS1B01G443200.1	Wheat	extracellular, mitochondrion	98.24	98.24
Os05t0574400-01	Rice	extracellular	89.74	90.0
Zm00001d039089_P001	Maize	mitochondrion	87.98	88.24
EES19985	Sorghum	mitochondrion	87.68	87.94
TraesCS3A01G234800.2	Wheat	mitochondrion	84.75	85.0
VIT_10s0003g01000.t01	Wine grape	mitochondrion	84.46	81.82
Zm00001d009640_P002	Maize	mitochondrion, plasma membrane	87.98	81.52
Bra038112.1-P	Field mustard	mitochondrion	74.49	81.41
CDY25868	Canola	mitochondrion	81.23	81.23
CDY55845	Canola	mitochondrion	80.94	80.94
CDY59402	Canola	mitochondrion	80.94	80.94
Bra030951.1-P	Field mustard	mitochondrion	80.94	80.94
CDY02518	Canola	mitochondrion	80.65	80.65
Solyc07g062650.2.1	Tomato	extracellular	81.82	80.64
PGSC0003DMT400032266	Potato	cytosol, extracellular	81.82	80.64
KRH26205	Soybean	mitochondrion	81.52	80.58
KRH55117	Soybean	mitochondrion	81.52	80.58
CDY26002	Canola	mitochondrion	80.94	80.47
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	82.11	80.46
GSMUA_Achr4P08580_001	Banana	mitochondrion	81.82	80.4
AT1G53240.1	Thale cress	mitochondrion	80.35	80.35
CDY24107	Canola	mitochondrion	80.06	80.29
Bra039662.1-P	Field mustard	mitochondrion	79.77	80.0
Solyc12g014180.1.1	Tomato	mitochondrion, unclear	80.06	79.82
PGSC0003DMT400039788	Potato	mitochondrion	79.77	79.77
AT3G15020.1	Thale cress	mitochondrion	78.89	78.89
VIT_19s0014g01640.t01	Wine grape	mitochondrion	79.18	77.81
CDY55842	Canola	mitochondrion	29.33	74.07
HORVU1Hr1G090710.1	Barley	cytosol	75.95	64.91
TraesCS5A01G014300.1	Wheat	nucleus, plastid	64.52	61.45
TraesCS5A01G407700.1	Wheat	cytosol, peroxisome, plastid	59.53	53.85
TraesCS1A01G348500.1	Wheat	plastid	58.06	49.75
TraesCS7A01G386600.1	Wheat	plastid	57.18	49.49
HORVU1Hr1G090720.1	Barley	peroxisome	17.01	27.49

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:2.3.8	Gene3D:3.40.50.720	Gene3D:3.90.110.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060
GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF45	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772
EnsemblPlantsGene:TraesCS1A01G412900	EnsemblPlants:TraesCS1A01G412900.1	TIGR:cd01337	SEG:seg	:	:

Description

No Description!

Coordinates

chr1A:-:573060465..573064961

Molecular Weight (calculated)

35528.2 Da

IEP (calculated)

8.605

GRAVY (calculated)

0.155

Length

341 amino acids

Sequence
(BLAST)

001: MRMSLLRSAS QHLRRRRDYS SASASPERKV AILGAAGGIG QPLALLMKLN PLVSSLSLYD IAATPGVAAD VSHINTRALV KGFVGDDQLG EALEGADLVI
101: IPAGVPRKPG MTRDDLFKIN AGIVKGLCTA IARHCPNALV NMISNPVNST VPIAAEVFKK AGTYDEKKLF GVTTLDVVRA KTFYAGKANV PVTGVNVPVV
201: GGHAGITILP LFSQATPASN ALSHEDLLAL TKRTQDGGTE VVEAKAGKGS ATLSMAYAGA VFGDACLKGL NGVPDIVECS FVQSTVTELP FFASKVRLGK
301: SGVEEVMGLG ELSALEKEGL ESLKGELLSS IEKGVKFAQE S

Best Arabidopsis Sequence Match ( AT1G53240.1 )
(BLAST)

001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q

Arabidopsis Description

mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.