CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022229_P001	Maize	plastid	83.25	84.11
Os07t0630800-03	Rice	plastid	78.35	75.25
OQU80513	Sorghum	plastid	63.66	62.69
EES19985	Sorghum	mitochondrion	52.58	60.0
KXG37460	Sorghum	mitochondrion	52.06	45.7
KXG24112	Sorghum	plastid	52.06	45.29
KXG33002	Sorghum	cytosol, nucleus, peroxisome	52.84	42.53

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:23.1.3.4.3	Gene3D:3.40.50.720	Gene3D:3.90.110.10	EntrezGene:8079364	UniProt:C5X371
ProteinID:EER99754.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0019752
GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N
InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	EnsemblPlants:OQU90313	ProteinID:OQU90313	ProteinID:OQU90313.1
PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	PANTHER:PTHR11540	PANTHER:PTHR11540:SF25	MetaCyc:PWY-1622
MetaCyc:PWY-5392	MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969
MetaCyc:PWY-7115	MetaCyc:PWY-7383	EnsemblPlantsGene:SORBI_3002G385700	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772
UniParc:UPI0001A83F9B	RefSeq:XP_002463233.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:74038065..74041790

Molecular Weight (calculated)

40530.6 Da

IEP (calculated)

7.859

GRAVY (calculated)

0.116

Length

388 amino acids

Sequence
(BLAST)

001: MAAAAIATLS FSSVPCKKRP RHGASSFDAQ QFSNSSSYCH SLTLRPRVPR SRAVSRVVVA QAGSGSYKVA ILGAAGGIGQ PLSLLAKMSP LVSALHLYDI
101: ANVEPVTADL SHCNTPAQVA GFTGKDALAG CLSGADVVVI PAGVPRKPGM TRDDLFSVNA GIVRDLVAAV ADHAPGALVH VISNPVNSTV PIAAEVLKQK
201: GAYDPRRLFG VTTLGVVRAN AFVAARKGLP VAEVDVPVVG GHAAATILPL LSKARPKAAF TDEEVEELTA RIRDAGTEVV EAKAGAGSAT LSMAYAAARF
301: LEASLRGLDG HDDVYECTYV QSQVVPELPF FACRVKLGRD GVEEVLGSEL RGLTDYEARE LEDLKPKLKA SIDKGIAYVQ QNQEAALN

Best Arabidopsis Sequence Match ( AT3G47520.1 )
(BLAST)

001: MATATSASLF STVSSSYSKA SSIPHSRLQS VKFNSVPSFT GLKSTSLISG SDSSSLAKTL RGSVTKAQTS DKKPYGFKIN ASYKVAVLGA AGGIGQPLSL
101: LIKMSPLVST LHLYDIANVK GVAADLSHCN TPSQVRDFTG PSELADCLKD VNVVVIPAGV PRKPGMTRDD LFNINANIVK TLVEAVAENC PNAFIHIISN
201: PVNSTVPIAA EVLKKKGVYD PKKLFGVTTL DVVRANTFVS QKKNLKLIDV DVPVIGGHAG ITILPLLSKT KPSVNFTDEE IQELTVRIQN AGTEVVDAKA
301: GAGSATLSMA YAAARFVESS LRALDGDGDV YECSFVESTL TDLPFFASRV KIGKNGLEAV IESDLQGLTE YEQKALEALK VELKASIDKG VAFANKPAAA
401: AAN

Arabidopsis Description

MDHMalate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.