CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27044	Soybean	nucleus	93.37	93.37
KRH22285	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	93.27	92.13
PGSC0003DMT400052608	Potato	cytosol	88.61	89.45
Solyc07g055060.2.1	Tomato	nucleus	88.72	88.9
KRH26228	Soybean	nucleus	87.58	87.49
KRH55092	Soybean	nucleus	87.37	87.28
Bra030945.1-P	Field mustard	cytosol	86.75	86.93
CDY02513	Canola	cytosol	86.75	86.93
AT1G53310.3	Thale cress	cytosol	86.96	86.87
CDX75798	Canola	cytosol	63.98	86.8
CDX98516	Canola	cytosol	83.64	86.6
AT3G14940.1	Thale cress	cytosol	86.75	86.57
Bra001575.1-P	Field mustard	cytosol	86.54	86.45
CDX82457	Canola	cytosol	69.25	86.43
CDY25721	Canola	cytosol	79.71	86.42
KRH27345	Soybean	endoplasmic reticulum	86.13	86.04
CDX97618	Canola	cytosol	69.05	85.95
Bra027293.1-P	Field mustard	cytosol	86.02	85.94
KRH21974	Soybean	cytosol	85.82	85.73
CDY45929	Canola	cytosol	74.33	85.68
KRH70911	Soybean	cytosol	14.7	39.66
KRH70922	Soybean	cytosol	14.29	34.5
KRH34779	Soybean	cytosol	32.71	30.62
KRH75540	Soybean	cytosol	32.82	30.02
KRH70920	Soybean	cytosol	15.73	29.92
KRH71121	Soybean	cytosol	32.51	29.76
KRH70915	Soybean	cytosol	18.22	25.88
KRH70912	Soybean	cytosol, golgi, nucleus	10.56	25.44
KRH70917	Soybean	cytosol	18.22	17.92
KRH71124	Soybean	cytosol	10.56	13.09

Protein Annotations

KEGG:00620+4.1.1.31	KEGG:00680+4.1.1.31	KEGG:00710+4.1.1.31	KEGG:00720+4.1.1.31	Gene3D:1.20.1440.90	MapMan:1.4.1.1
EntrezGene:100807407	EMBL:ACUP02004058	EnsemblPlantsGene:GLYMA_06G277500	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006091
GO:GO:0006099	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008964	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0015977	GO:GO:0048046	GO:GO:0048366	UniProt:I1KEN4
EnsemblPlants:KRH55745	ProteinID:KRH55745	ProteinID:KRH55745.1	HAMAP:MF_00595	InterPro:PEPCASE_His_AS	InterPro:PEP_COase
InterPro:PEP_COase_Lys_AS	InterPro:PEP_COase_bac/pln-type	PFAM:PF00311	PRINTS:PR00150	ScanProsite:PS00393	ScanProsite:PS00781
PANTHER:PTHR30523	PANTHER:PTHR30523:SF12	MetaCyc:PWY-1622	MetaCyc:PWY-241	MetaCyc:PWY-5913	MetaCyc:PWY-6142
MetaCyc:PWY-6146	MetaCyc:PWY-6549	MetaCyc:PWY-7115	MetaCyc:PWY-7117	MetaCyc:PWY-7124	InterPro:Pyrv/PenolPyrv_Kinase-like_dom
SUPFAM:SSF51621	UniParc:UPI000233A17C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:46935318..46943931

Molecular Weight (calculated)

110282.0 Da

IEP (calculated)

5.480

GRAVY (calculated)

-0.391

Length

966 amino acids

Sequence
(BLAST)

001: MGTRNFEKMA SIDAQLRLLA PSKVSDDDKL VEYDALLLDR FLDILQDLHG DDIRETVQDC YELSAEYEGQ NNPQKLEELG NMLTGLDAGD SIVISKSFAH
101: MLNLANLAEE VQIAYRRRIK LLKKGDFADE NSAITESDIE ETFKRLVNQL KKTPQEIFDA LKSQTVDLVL TAHPTQSVRR SLLQKHGRIR NCLTQLYAKD
201: ITPDDKQELD EALQREIQAA FRTDEIRRTP PTPQDEMRAG MSYFHETIWK GIPKFLRRVD TALKNIGINE RVPYNAPVIQ FSSWMGGDRD GNPRVTPEVT
301: RDVCLLARMM AANLYFSQIE DLMFELSMWR CNDELRVRSD ELLSSSKRDA KHYIEFWKQI PPNEPYRVIL GDVRDKLYNT RERARQLLAN GSSEIPEETT
401: FTNVEQFLEP LELCYRSLCA CGDQPIADGS LLDFLRQVST FGLSLVRLDI RQESDRHTDV MDAITNHLEI GSYREWSEER RQEWLLSELS GKRPLFGPDL
501: PKTEEIADVL ETFHVIAELP SDSFGAYIIS MATAPSDVLS VELLQRECHV KQPLRVVPLF EKLADLEAAP AAVARLFSID WYRDRINGKQ EVMIGYSDSG
601: KDAGRFSAAW ALYKAQEELI KVAKEFGVKL TMFHGRGGTV GRGGGPTHLA ILSQPPDTIH GSLRVTVQGE VIEQSFGEEH LCFRTLQRFT AATLEHGMHP
701: PVAPKPEWRA LMDEMAVIAT EEYRSIVFQE PRFVEYFRCA TPELEYGRMN IGSRPSKRKP SGGIESLRAI PWIFAWTQTR FHLPVWLGFG AAFSHVIKKD
801: PKNLQMLQDM YNQWPFFRVS LDLVEMVFAK GDPGIAALYD KLLVSEELWP FGERLRSMFE ETKSLLLQVA GHKDLLEGDP YLKQRLRLRD SYITTLNVLQ
901: AYTLKRIRDP DYHVKLRPHL SKDYMESNKP AAELVKLNPT SDYAPGLEDT LILTMKGIAA GMQNTG

Best Arabidopsis Sequence Match ( AT1G53310.3 )
(BLAST)

001: MANRKLEKMA SIDVHLRQLV PGKVSEDDKL VEYDALLLDR FLDILQDLHG EDLRETVQEL YEHSAEYEGK HEPKKLEELG SVLTSLDPGD SIVIAKAFSH
101: MLNLANLAEE VQIAYRRRIK KLKKGDFVDE SSATTESDLE ETFKKLVGDL NKSPEEIFDA LKNQTVDLVL TAHPTQSVRR SLLQKHGRIR DCLAQLYAKD
201: ITPDDKQELD EALQREIQAA FRTDEIKRTP PTPQDEMRAG MSYFHETIWK GVPKFLRRVD TALKNIGIEE RVPYNAPLIQ FSSWMGGDRD GNPRVTPEVT
301: RDVCLLARMM AATMYFNQIE DLMFEMSMWR CNDELRARAD EVHANSRKDA AKHYIEFWKS IPTTEPYRVI LGDVRDKLYH TRERAHQLLS NGHSDVPVEA
401: TFINLEQFLE PLELCYRSLC SCGDRPIADG SLLDFLRQVS TFGLSLVRLD IRQESDRHTD VLDAITTHLD IGSYREWSEE RRQEWLLSEL SGKRPLFGSD
501: LPKTEEIADV LDTFHVIAEL PADSFGAYII SMATAPSDVL AVELLQRECR VKQPLRVVPL FEKLADLEAA PAAVARLFSV DWYKNRINGK QEVMIGYSDS
601: GKDAGRLSAA WQLYKAQEEL VKVAKEYGVK LTMFHGRGGT VGRGGGPTHL AILSQPPDTI NGSLRVTVQG EVIEQSFGEE HLCFRTLQRF TAATLEHGMR
701: PPISPKPEWR ALLDEMAVVA TEEYRSVVFQ EPRFVEYFRL ATPELEYGRM NIGSRPSKRK PSGGIESLRA IPWIFAWTQT RFHLPVWLGF GSAIRHVIEK
801: DVRNLHMLQD MYQHWPFFRV TIDLIEMVFA KGDPGIAALY DKLLVSEELW PFGEKLRANF EETKKLILQT AGHKDLLEGD PYLKQRLRLR DSYITTLNVC
901: QAYTLKRIRD PSYHVTLRPH ISKEIAESSK PAKELIELNP TSEYAPGLED TLILTMKGIA AGLQNTG

Arabidopsis Description

PPC1Phosphoenolpyruvate carboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.