CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55092	Soybean	nucleus	98.55	98.55
KRH21974	Soybean	cytosol	92.45	92.45
KRH27345	Soybean	endoplasmic reticulum	92.45	92.45
VIT_19s0014g01390.t01	Wine grape	cytosol	90.9	91.28
VIT_12s0028g02180.t01	Wine grape	cytosol	88.83	89.02
GSMUA_Achr4P08030_001	Banana	cytosol	86.14	89.0
GSMUA_Achr6P26850_001	Banana	cytosol	86.35	88.83
PGSC0003DMT400039809	Potato	cytosol	88.42	88.6
Solyc12g014250.1.1	Tomato	cytosol, nucleus, plastid, unclear	87.9	88.08
KRH27044	Soybean	nucleus	87.8	87.89
PGSC0003DMT400054791	Potato	cytosol	87.49	87.76
KRH55745	Soybean	cytosol, endoplasmic reticulum, nucleus	87.49	87.58
Solyc10g007290.2.1	Tomato	cytosol, plastid	87.28	87.55
EES13699	Sorghum	cytosol	86.66	86.93
EER98700	Sorghum	cytosol	86.56	86.56
AT1G53310.3	Thale cress	cytosol	86.56	86.56
CDY02513	Canola	cytosol	86.25	86.51
Bra030945.1-P	Field mustard	cytosol	86.25	86.51
AT3G14940.1	Thale cress	cytosol	86.56	86.47
CDX98516	Canola	cytosol	83.35	86.39
CDY25721	Canola	cytosol	79.42	86.2
Os08t0366000-01	Rice	cytosol, plasma membrane	85.83	86.1
KRH22285	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	87.07	86.09
PGSC0003DMT400032245	Potato	cytosol	85.63	85.89
Bra001575.1-P	Field mustard	cytosol	85.83	85.83
CDX97618	Canola	cytosol	68.87	85.82
CDX75798	Canola	cytosol	63.19	85.81
CDX82457	Canola	cytosol	68.67	85.79
Bra027293.1-P	Field mustard	cytosol	85.73	85.73
KXG33409	Sorghum	cytosol	85.52	85.61
Os01t0758300-01	Rice	cytosol, plasma membrane	81.8	85.61
CDY45929	Canola	cytosol	73.84	85.2
Zm00001d012702_P008	Maize	cytosol	85.11	85.2
TraesCS5A01G181800.1	Wheat	cytosol, golgi	85.52	85.08
HORVU5Hr1G055350.3	Barley	cytosol	85.52	85.08
TraesCS5B01G179800.1	Wheat	cytosol, extracellular, golgi, unclear	85.42	84.98
Zm00001d020057_P004	Maize	cytosol, extracellular	85.94	84.97
TraesCS5D01G186200.1	Wheat	cytosol	85.32	84.88
GSMUA_Achr10P...	Banana	cytosol	82.21	84.66
GSMUA_Achr6P14490_001	Banana	cytosol	82.11	84.56
HORVU3Hr1G073020.2	Barley	cytosol	84.38	84.47
TraesCS3B01G329800.1	Wheat	cytosol, golgi	83.97	84.06
Solyc07g062530.2.1	Tomato	cytosol, nucleus, plastid	83.76	84.02
TraesCS3A01G306700.1	Wheat	cytosol	83.66	83.75
TraesCS3D01G295200.1	Wheat	cytosol	83.66	83.75
GSMUA_Achr9P06420_001	Banana	cytosol	81.7	81.53
KRH70911	Soybean	cytosol	14.79	39.94
KRH70922	Soybean	cytosol	14.37	34.75
KRH34779	Soybean	cytosol	32.78	30.72
KRH75540	Soybean	cytosol	32.89	30.11
KRH70920	Soybean	cytosol	15.72	29.92
KRH71121	Soybean	cytosol	32.58	29.86
KRH70915	Soybean	cytosol	18.41	26.18
KRH70912	Soybean	cytosol, golgi, nucleus	10.65	25.69
KRH70917	Soybean	cytosol	18.1	17.82
KRH71124	Soybean	cytosol	10.75	13.35

Protein Annotations

KEGG:00620+4.1.1.31	KEGG:00680+4.1.1.31	KEGG:00710+4.1.1.31	KEGG:00720+4.1.1.31	Gene3D:1.20.1440.90	MapMan:1.4.1.1
EntrezGene:547769	UniProt:A0A0R0HIN8	EMBL:D10717	EnsemblPlantsGene:GLYMA_12G161300	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006091	GO:GO:0006099	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008964
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015977	GO:GO:0015979	GO:GO:0016829
GO:GO:0048046	GO:GO:0048366	EnsemblPlants:KRH26228	ProteinID:KRH26228	ProteinID:KRH26228.1	HAMAP:MF_00595
InterPro:PEPCASE_His_AS	InterPro:PEP_COase	InterPro:PEP_COase_Lys_AS	InterPro:PEP_COase_bac/pln-type	PFAM:PF00311	PRINTS:PR00150
ScanProsite:PS00393	ScanProsite:PS00781	PANTHER:PTHR30523	PANTHER:PTHR30523:SF11	MetaCyc:PWY-1622	MetaCyc:PWY-241
MetaCyc:PWY-5913	MetaCyc:PWY-6142	MetaCyc:PWY-6146	MetaCyc:PWY-6549	MetaCyc:PWY-7115	MetaCyc:PWY-7117
MetaCyc:PWY-7124	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	UniProt:Q02909	SUPFAM:SSF51621	UniParc:UPI0000126EC4	SEG:seg

Description

PPC16hypothetical protein

Coordinates

chr12:-:29898332..29906466

Molecular Weight (calculated)

110693.0 Da

IEP (calculated)

5.805

GRAVY (calculated)

-0.398

Length

967 amino acids

Sequence
(BLAST)

001: MANRNLEKMA SIDAQLRLLV PAKVSEDDKL VEYDALLLDR FLDILQDLHG EDLKETVQEV YELSAEYEGK HDPKKLEELG NLITSLDAGD SIVVAKSFSH
101: MLNLANLAEE VQIAHSRRNK LKKGDFADEN NATTESDIEE TLKKLVVDMK KSPQEVFDAL KNQTVDLVLT AHPTQSVRRS LLQKHGRIRN NLTQLYAKDI
201: TPDDKQELDE ALQREIQAAF RTDEIRRTPP TPQDEMRAGM SYFHETIWKG VPTFLRRVDT ALKNIGINER VPYNAPLIQF SSWMGGDRDG NPRVTPEVTR
301: DVCLLARMMA ANLYYSQIED LMFELSMWRC NDELRVRADE LNRSSKKNSV AKHYIEFWKA IPPNEPYRVL LGEVRNRLYQ TRERSRHLLA HGYSDIPEEE
401: TFTNVEEFLE PLELCYRSLC ACGDRAIADG SLLDFLRQVS TFGLSLVRLD IRQESDRHTD VLDAITKHLE IGSYQEWSEE KRQQWLLSEL SGKRPLFGPD
501: LPQTEEIRDV LETFHVIAEL PLDNFGAYII SMATAPSDVL AVELLQRECH VKHPLRVVPL FEKLADLEAA PAALARLFSV DWYRNRINGK QEVMIGYSDS
601: GKDAGRFSAA WQLYKAQEEL IMVAKQYGVK LTMFHGRGGT VGRGGGPTHL AILSQPPETI HGSLRVTVQG EVIEQSFGEQ HLCFRTLQRF TAATLEHGMH
701: PPISPKPEWR ALMDEMAVIA TEEYRSIVFK EPRFVEYFRL ATPELEYGRM NIGSRPAKRR PSGGIETLRA IPWIFAWTQT RFHLPVWLGF GAAFKHVIEK
801: DVRNIHVLQE MYNQWPFFRV TIDLVEMVFA KGDPGIAALY DRLLVSEDLW SFGEQLRTMY EETKELLLQV AGHRDLLEGD PYLKQRLRLR DSYITTLNVC
901: QAYTLKRIRD PNYNVKLRPH ISKESIEISK PADELITLNP TSEYAPGLED TLILTMKGIA AGLQNTG

Best Arabidopsis Sequence Match ( AT3G14940.2 )
(BLAST)

001: MAGRNIEKMA SIDAQLRQLV PAKVSEDDKL VEYDALLLDR FLDILQDLHG EDLRETVQEL YELSAEYEGK REPSKLEELG SVLTSLDPGD SIVISKAFSH
101: MLNLANLAEE VQIAHRRRIK KLKKGDFVDE SSATTESDIE ETFKRLVSDL GKSPEEIFDA LKNQTVDLVL TAHPTQSVRR SLLQKHGRIR DCLAQLYAKD
201: ITPDDKQELD ESLQREIQAA FRTDEIRRTP PTPQDEMRAG MSYFHETIWK GVPKFLRRVD TALKNIGIDE RVPYNAPLIQ FSSWMGGDRD GNPRVTPEVT
301: RDVCLLARMM AANLYYNQIE NLMFELSMWR CTDEFRVRAD ELHRNSRKDA AKHYIEFWKT IPPTEPYRVI LGDVRDKLYH TRERSRQLLS NGISDIPEEA
401: TFTNVEQFLE PLELCYRSLC SCGDSPIADG SLLDFLRQVS TFGLSLVRLD IRQESERHTD VLDAITKHLD IGSSYRDWSE EGRQEWLLAE LSGKRPLFGP
501: DLPKTEEISD VLDTFKVISE LPSDCFGAYI ISMATSPSDV LAVELLQREC HVKNPLRVVP LFEKLADLEA APAAVARLFS IDWYKNRING KQEVMIGYSD
601: SGKDAGRLSA AWELYKAQEE LVKVAKKYGV KLTMFHGRGG TVGRGGGPTH LAILSQPPDT VNGSLRVTVQ GEVIEQSFGE AHLCFRTLQR FTAATLEHGM
701: NPPISPKPEW RALLDEMAVV ATEEYRSVVF QEPRFVEYFR LATPELEYGR MNIGSRPSKR KPSGGIESLR AIPWIFAWTQ TRFHLPVWLG FGAAFRYAIK
801: KDVRNLHMLQ DMYKQWPFFR VTIDLIEMVF AKGDPGIAAL YDKLLVSEDL WAFGEKLRAN FDETKNLVLQ TAGHKDLLEG DPYLKQRLRL RDSYITTLNV
901: CQAYTLKRIR DANYNVTLRP HISKEIMQSS KSAQELVKLN PTSEYAPGLE DTLILTMKGI AAGLQNTG

Arabidopsis Description

PPC3Phosphoenolpyruvate carboxylase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q84VW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.