Factsheet for Solyc12g014250.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid, nucleus, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039809	Potato	cytosol	98.65	98.65
Solyc10g007290.2.1	Tomato	cytosol, plastid	91.3	91.39
VIT_19s0014g01390.t01	Wine grape	cytosol	90.78	90.97
GSMUA_Achr4P08030_001	Banana	cytosol	85.39	88.03
KRH26228	Soybean	nucleus	88.08	87.9
AT1G53310.3	Thale cress	cytosol	87.88	87.69
KRH55092	Soybean	nucleus	87.77	87.59
GSMUA_Achr6P26850_001	Banana	cytosol	85.28	87.55
CDY02513	Canola	cytosol	87.46	87.55
Bra030945.1-P	Field mustard	cytosol	87.46	87.55
Solyc07g062530.2.1	Tomato	cytosol, nucleus, plastid	87.36	87.45
EES13699	Sorghum	cytosol	87.15	87.24
AT3G14940.1	Thale cress	cytosol	87.46	87.19
CDX82457	Canola	cytosol	69.84	87.08
Bra001575.1-P	Field mustard	cytosol	86.94	86.76
KRH27345	Soybean	endoplasmic reticulum	86.94	86.76
CDY25721	Canola	cytosol	80.1	86.76
CDX97618	Canola	cytosol	69.74	86.73
Bra027293.1-P	Field mustard	cytosol	86.84	86.66
Os08t0366000-01	Rice	cytosol, plasma membrane	86.53	86.62
CDX98516	Canola	cytosol	83.73	86.6
KRH21974	Soybean	cytosol	86.63	86.45
Solyc07g055060.2.1	Tomato	nucleus	86.22	86.31
EER98700	Sorghum	cytosol	86.42	86.25
CDX75798	Canola	cytosol	63.63	86.24
CDY45929	Canola	cytosol	74.72	86.04
KXG33409	Sorghum	cytosol	85.91	85.82
Zm00001d012702_P008	Maize	cytosol	85.39	85.3
Os01t0758300-01	Rice	cytosol, plasma membrane	81.66	85.28
Zm00001d020057_P004	Maize	cytosol, extracellular	86.01	84.87
HORVU3Hr1G073020.2	Barley	cytosol	84.46	84.37
TraesCS3B01G329800.1	Wheat	cytosol, golgi	84.15	84.06
TraesCS3A01G306700.1	Wheat	cytosol	84.04	83.95
TraesCS5D01G186200.1	Wheat	cytosol	84.56	83.95
HORVU5Hr1G055350.3	Barley	cytosol	84.56	83.95
TraesCS5A01G181800.1	Wheat	cytosol, golgi	84.46	83.85
TraesCS5B01G179800.1	Wheat	cytosol, extracellular, golgi, unclear	84.46	83.85
TraesCS3D01G295200.1	Wheat	cytosol	83.83	83.75
GSMUA_Achr6P14490_001	Banana	cytosol	80.83	83.07
GSMUA_Achr10P...	Banana	cytosol	80.31	82.53
GSMUA_Achr9P06420_001	Banana	cytosol	79.9	79.57
Solyc04g006970.2.1	Tomato	plastid	33.58	30.86

Protein Annotations

KEGG:00620+4.1.1.31	KEGG:00680+4.1.1.31	KEGG:00710+4.1.1.31	KEGG:00720+4.1.1.31	Gene3D:1.20.1440.90	MapMan:1.4.1.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006091	GO:GO:0006099	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008964	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0015977	GO:GO:0016829	GO:GO:0048046	GO:GO:0048366	UniProt:K4DCW0	HAMAP:MF_00595
InterPro:PEPCASE_His_AS	InterPro:PEP_COase	InterPro:PEP_COase_Lys_AS	InterPro:PEP_COase_bac/pln-type	PFAM:PF00311	PRINTS:PR00150
ScanProsite:PS00393	ScanProsite:PS00781	PANTHER:PTHR30523	PANTHER:PTHR30523:SF11	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	SUPFAM:SSF51621
EnsemblPlantsGene:Solyc12g014250.1	EnsemblPlants:Solyc12g014250.1.1	UniParc:UPI000276A65B	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:5069479..5074778

Molecular Weight (calculated)

110187.0 Da

IEP (calculated)

5.712

GRAVY (calculated)

-0.396

Length

965 amino acids

Sequence
(BLAST)

001: MATKNLEKLA SIDAQLRQLV PAKVSEDDKL VEYDALLLDR FLDILQDLHG EDLKGTVQDC YELSAEYEAK HDPKKLEELG NVLTSLDPGD SIVIAKAFSH
101: MLNLANLAEE VQIAYRRRQK LKKKGDFGDE SNATTESDIE ETFKKLVGDL KKSPQEVFDA IKNQTVDLVL TAHPTQSVRR SLLQKHGRIR DCLAQLYAKD
201: ITPDDKQELD EALQREIQAA FRTDEIRRTP PTPQDEMRAG MSYFHETIWK GVPKFLRRVD TALKNIGIDE RVPYNAPLIQ FSSWMGGDRD GNPRVTPEVT
301: RDVCLLARMM AANLYYSQIE DLMFELSMWR CSEELRVRAD KLQRSSRRDE KHYIEFWKQV PPNEPYRVIL GDVRDKLYQT RERARQLLGH GYSEIPEEAT
401: YTNIEQFLEP LELCYRSLCA CGDLSIADGS LLDFLRQVST FGLSLVRLDI RQESDRHTDV LDAITQHLEI GSYREWSEER RQEWLLSELS GKRPLFGRDL
501: PKTEEIADVL DTFHVIAELP ADCFGAYIIS MATAPSDVLA VELLQRECRV RQPLRVVPLF EKLADLDAAP AAVARLFSIE WYRNRINGKQ EVMIGYSDSG
601: KDAGRLSAAW QLYKAQEELI QVAKEFDVKL TMFHGRGGTV GRGGGPAHLA ILSQPPETIH GSLRVTVQGE VIEHSFGEEH LCFRTLQRYT AATLEHGMHP
701: PVSPKPEWRA LMDEIAVVAT EKYRSIVFKE PRFVEYFRLA TPELEYGRMN IGSRPSKRKP SGGIESLRAI PWIFAWTQTR FHLPVWLGFG AAFKYAIEKD
801: IKNLRMLQEM YNAWPFFRVT IDLVEMVFAK GDPGIAALFD KLLVSEDLLS FGELLRSNYE ETKSLLLQIA GHKDLLEGDP YLKQRLRLRD SYITTLNVCQ
901: AYTLKRIRDP DYSVTPRPHI SKEYMEAKPA TELVNLNPTS EYAPGLEDTL ILTMKGIAAG MQNTG

Best Arabidopsis Sequence Match ( AT1G53310.3 )
(BLAST)

001: MANRKLEKMA SIDVHLRQLV PGKVSEDDKL VEYDALLLDR FLDILQDLHG EDLRETVQEL YEHSAEYEGK HEPKKLEELG SVLTSLDPGD SIVIAKAFSH
101: MLNLANLAEE VQIAYRRRIK KLKKGDFVDE SSATTESDLE ETFKKLVGDL NKSPEEIFDA LKNQTVDLVL TAHPTQSVRR SLLQKHGRIR DCLAQLYAKD
201: ITPDDKQELD EALQREIQAA FRTDEIKRTP PTPQDEMRAG MSYFHETIWK GVPKFLRRVD TALKNIGIEE RVPYNAPLIQ FSSWMGGDRD GNPRVTPEVT
301: RDVCLLARMM AATMYFNQIE DLMFEMSMWR CNDELRARAD EVHANSRKDA AKHYIEFWKS IPTTEPYRVI LGDVRDKLYH TRERAHQLLS NGHSDVPVEA
401: TFINLEQFLE PLELCYRSLC SCGDRPIADG SLLDFLRQVS TFGLSLVRLD IRQESDRHTD VLDAITTHLD IGSYREWSEE RRQEWLLSEL SGKRPLFGSD
501: LPKTEEIADV LDTFHVIAEL PADSFGAYII SMATAPSDVL AVELLQRECR VKQPLRVVPL FEKLADLEAA PAAVARLFSV DWYKNRINGK QEVMIGYSDS
601: GKDAGRLSAA WQLYKAQEEL VKVAKEYGVK LTMFHGRGGT VGRGGGPTHL AILSQPPDTI NGSLRVTVQG EVIEQSFGEE HLCFRTLQRF TAATLEHGMR
701: PPISPKPEWR ALLDEMAVVA TEEYRSVVFQ EPRFVEYFRL ATPELEYGRM NIGSRPSKRK PSGGIESLRA IPWIFAWTQT RFHLPVWLGF GSAIRHVIEK
801: DVRNLHMLQD MYQHWPFFRV TIDLIEMVFA KGDPGIAALY DKLLVSEELW PFGEKLRANF EETKKLILQT AGHKDLLEGD PYLKQRLRLR DSYITTLNVC
901: QAYTLKRIRD PSYHVTLRPH ISKEIAESSK PAKELIELNP TSEYAPGLED TLILTMKGIA AGLQNTG

Arabidopsis Description

PPC1Phosphoenolpyruvate carboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.