Factsheet for Solyc04g006970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plasma membrane 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019322	Potato	cytosol	90.1	90.1
KRH34779	Soybean	cytosol	75.05	76.36
AT1G68750.1	Thale cress	cytosol	74.29	75.58
VIT_01s0011g02740.t01	Wine grape	cytosol	75.9	75.12
KRH71121	Soybean	cytosol	75.43	75.07
KRH75540	Soybean	cytosol	74.67	74.24
Zm00001d040129_P001	Maize	cytosol	72.38	73.5
Bra004016.1-P	Field mustard	cytosol	72.1	72.93
TraesCS3B01G011200.1	Wheat	cytosol	67.24	72.86
Os01t0110700-01	Rice	cytosol	71.52	72.56
EES00444	Sorghum	cytosol	71.33	72.16
Bra024730.1-P	Field mustard	cytosol	75.43	72.07
TraesCS3D01G005000.1	Wheat	cytosol	71.9	72.04
TraesCS3B01G008500.1	Wheat	cytosol	71.71	71.99
HORVU3Hr1G000940.2	Barley	cytosol	71.24	71.37
KRH70911	Soybean	cytosol	23.71	69.55
KRH70922	Soybean	cytosol	26.1	68.5
GSMUA_Achr1P20720_001	Banana	cytosol	71.24	66.08
CDY28081	Canola	cytosol	28.29	59.76
KRH70915	Soybean	cytosol	35.14	54.26
KRH70920	Soybean	cytosol	25.14	51.97
KRH70912	Soybean	cytosol, golgi, nucleus	16.0	41.9
KRH70917	Soybean	cytosol	32.57	34.83
Solyc07g055060.2.1	Tomato	nucleus	31.24	34.02
Solyc10g007290.2.1	Tomato	cytosol, plastid	31.24	34.02
Solyc07g062530.2.1	Tomato	cytosol, nucleus, plastid	30.95	33.71
Solyc12g014250.1.1	Tomato	cytosol, nucleus, plastid, unclear	30.86	33.58

Protein Annotations

KEGG:00620+4.1.1.31	KEGG:00680+4.1.1.31	KEGG:00710+4.1.1.31	KEGG:00720+4.1.1.31	Gene3D:1.20.1440.90	MapMan:1.4.1.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0008964
GO:GO:0009987	GO:GO:0015977	UniProt:K4BNK4	HAMAP:MF_00595	InterPro:PEPCASE_His_AS	InterPro:PEP_COase
InterPro:PEP_COase_Lys_AS	InterPro:PEP_COase_bac/pln-type	PFAM:PF00311	PRINTS:PR00150	ScanProsite:PS00393	ScanProsite:PS00781
PANTHER:PTHR30523	PANTHER:PTHR30523:SF6	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	SUPFAM:SSF51621	EnsemblPlantsGene:Solyc04g006970.2	EnsemblPlants:Solyc04g006970.2.1
UniParc:UPI00027665F3	SEG:seg	:	:	:	:

Description

Phosphoenolpyruvate carboxylase 4 [Source:Projected from Arabidopsis thaliana (AT1G68750) UniProtKB/Swiss-Prot;Acc:Q8GVE8]

Coordinates

chr4:-:663594..674845

Molecular Weight (calculated)

117880.0 Da

IEP (calculated)

6.971

GRAVY (calculated)

-0.401

Length

1050 amino acids

Sequence
(BLAST)

0001: MTDVTDDIAE EISFQGFDDD CRLLQSLLND VLHREVGPKF MEKVERTRVL AQGACNMRMA GIEDTAELLE KQLASELSKM TLEEALDLAR TFSHYLNLMG
0101: IAETHHRVRK TRGVVQLSKS CDDIFNHLLQ SGVPPDQLYD TVCKQAVEIV LTAHPTQINR RTLQYKHIRI AHLLEYNDRP DLGIEDRDML IEDLVREMTS
0201: IWQTDELRRH KPTPVDEARA GLHIVEQTLW KAVPHYLRRV SNALKKHTGR PLPLTCTPIR FGSWMGGDRD GNPNVTAKVT KDVSLLSRWM AIDLYVREVD
0301: SLRFELSMTQ CSERFARLAH EILEKGNTSD NQFDSWNHSS NWNQSKHQGQ HAPPFPTQLP TRADLPSCTA CSDVESHYPR LALPGTGVIP LKNKDGQTTS
0401: KVGPLDGDSS KNTEKAYGNG NITPRSASLS ASQLLQRKLF AENQIGRASF QKLMEPSSSH RPGIAPYRIV LGDVKEKLLK SRKRLELLLE DLPCDHDPMD
0501: YYETSDQLLE PLLLCYDSLQ SCGSGVLADG RLADLIRRVS TFGMVLMKLD LRQESGRHSE ALDAITNYLD MGTYSEWDEE KKLDFLIKEL KGKRPLVPPT
0601: IEVPPDVKEV LDTFKVAAEL GSDSLGAYVI SMASNASDVL AVELLQKDAR LAVAGELGRP CPGGTLRVVP LFETVKDLRE AGSVIRRLLS IDWYRDHVIK
0701: NHNGHQEVMV GYSDSGKDAG RFTAAWELYK AQEDVVAACN EYGIKITLFH GRGGSIGRGG GPTYLAIQSQ PPGSVMGSLR STEQGEMVQA KFGLPQMAVR
0801: QLEIYTTAVL LATLRPPQPP REQKWRNLMD DISNLSCRSY RSTVYENPEF LTYFHEATPQ AELGYLNIGS RPTRRKSSGG IGQLRAIPWI FAWTQTRFVL
0901: PAWLGVGAGL KGVCDKGHTE DLRAMYREWP FFQSTVDLIE MVLGKADIPI AKHYDDVLVS ESRRGLGAEM RRELLSTGNY VLQVTGHEKL SANNRSLRRL
1001: IESRLPYLNP MNILQVEILK RLRSDEDNHK LRDALLITIN GIAAGMRNTG

Best Arabidopsis Sequence Match ( AT1G68750.1 )
(BLAST)

0001: MTDTTDDIAE EISFQSFEDD CKLLGSLFHD VLQREVGNPF MEKVERIRIL AQSALNLRMA GIEDTANLLE KQLTSEISKM PLEEALTLAR TFTHSLNLMG
0101: IADTHHRMHK VHNVTQLARS CDDIFSQLLQ SGISPDELYK TVCKQEVEIV LTAHPTQINR RTLQYKHIRI AHLLEYNTRS DLSVEDRETL IEDLVREITS
0201: LWQTDELRRQ KPTPVDEARA GLNIVEQSLW KAVPQYLRRV SNSLKKFTGK PLPLTCTPMK FGSWMGGDRD GNPNVTAKVT KEVSLLSRWM AIDLYIREVD
0301: SLRFELSTDR CSDRFSRLAD KILEKDYDRG KSNFQKQQSS SCLPTQLPAR AHLPACIDFG ESRHTKFEIA TTDYMPPNLQ KQNEQDFSES DWEKIDNGSR
0401: SGLTSRGSFS STSQLLLQRK LFEESQVGKT SFQKLLEPPP LKRAGSAPYR IVLGEVKEKL VKTRRLLELL IEGLPCEYDP KNSYETSDQL LEPLLLCYES
0501: LQSSGARVLA DGRLADLIRR VSTFGMVLVK LDLRQEAARH SEALDAITTY LDMGTYSEWD EEKKLEFLTR ELKGKRPLVP QCIKVGPDVK EVLDTFRVAA
0601: ELGSESLGAY VISMASNASD VLAVELLQKD ARLALTSEHG KPCPGGTLRV VPLFETVNDL RAAGPSIRKL LSIDWYREHI QKNHNGHQEV MVGYSDSGKD
0701: AGRFTAAWEL YKAQENVVAA CNEFGIKITL FHGRGGSIGR GGGPTYLAIQ SQPPGSVMGS LRSTEQGEMV QAKFGIPQTA VRQLEVYTTA VLLATLKPPQ
0801: PPREEKWRNL MEEISGISCQ HYRSTVYENP EFLSYFHEAT PQAELGFLNI GSRPTRRKSS SGIGHLRAIP WVFAWTQTRF VLPAWLGVGA GLKGVSEKGH
0901: ADDLKEMYKE WPFFQSTLEL IEMVLAKADI PMTKHYDEQL VSEKRRGLGT ELRKELMTTE KYVLVISGHE KLLQDNKSLK KLIDSRLPYL NAMNMLQVEI
1001: LKRLRRDEDN NKLRDALLIT INGIAAGMRN TG

Arabidopsis Description

PPC4PPC4 [Source:UniProtKB/TrEMBL;Acc:A0A178W7Q9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.