Factsheet for Solyc07g055060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 25464976
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052608	Potato	cytosol	98.24	98.96
KRH27044	Soybean	nucleus	89.21	89.03
KRH55745	Soybean	cytosol, endoplasmic reticulum, nucleus	88.9	88.72
KRH22285	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	88.8	87.53
AT1G53310.3	Thale cress	cytosol	87.14	86.87
Bra030945.1-P	Field mustard	cytosol	86.62	86.62
CDY02513	Canola	cytosol	86.62	86.62
CDY25721	Canola	cytosol	79.98	86.53
CDX75798	Canola	cytosol	63.9	86.52
Solyc12g014250.1.1	Tomato	cytosol, nucleus, plastid, unclear	86.31	86.22
CDX82457	Canola	cytosol	69.19	86.18
AT3G14940.1	Thale cress	cytosol	86.41	86.05
Bra001575.1-P	Field mustard	cytosol	86.31	86.04
CDX98516	Canola	cytosol	83.19	85.96
Solyc10g007290.2.1	Tomato	cytosol, plastid	85.89	85.89
CDY45929	Canola	cytosol	74.38	85.56
CDX97618	Canola	cytosol	68.78	85.44
Bra027293.1-P	Field mustard	cytosol	85.68	85.42
Solyc07g062530.2.1	Tomato	cytosol, nucleus, plastid	82.99	82.99
Solyc04g006970.2.1	Tomato	plastid	34.02	31.24

Protein Annotations

KEGG:00620+4.1.1.31	KEGG:00680+4.1.1.31	KEGG:00710+4.1.1.31	KEGG:00720+4.1.1.31	Gene3D:1.20.1440.90	MapMan:1.4.1.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006091	GO:GO:0006099	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008964	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015977
GO:GO:0048046	GO:GO:0048366	UniProt:K4CG46	HAMAP:MF_00595	InterPro:PEPCASE_His_AS	InterPro:PEP_COase
InterPro:PEP_COase_Lys_AS	InterPro:PEP_COase_bac/pln-type	PFAM:PF00311	PRINTS:PR00150	ScanProsite:PS00393	ScanProsite:PS00781
PANTHER:PTHR30523	PANTHER:PTHR30523:SF12	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	SUPFAM:SSF51621	EnsemblPlantsGene:Solyc07g055060.2	EnsemblPlants:Solyc07g055060.2.1
UniParc:UPI000276C817	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:-:63187256..63194574

Molecular Weight (calculated)

109953.0 Da

IEP (calculated)

6.034

GRAVY (calculated)

-0.406

Length

964 amino acids

Sequence
(BLAST)

001: MSRKIEKMAS IDAQLRLLAP AKVSEDDKLV EYDALLLDRF LDILQDLHGE DIRETVQDCY ELSAEYEGKH DPHKLEELGS MLTSLDAGDS IVVTKAFSNM
101: LNLGNLAEEV QIAYRRRSKL KKRDFSDEAS ALTESDIEET FKKLVGQLNK SPQEVFDALK NQTVDLVLTA HPTQSVRRSL LQKHARIRDC MTQLYAKDIT
201: PDDKQELDEA LQREIQAAFR TDEIRRTPPT PQDEMRAGMS YFHETIWKGV PKFLRRVDTA LKNIGINERV PYNAPLIQFS SWMGGDRDGN PRVTPEVTRD
301: VCLLARMMAA NLYFSQIEDL MFELSMWRCN DELRVRAEEL HRTSKRDAKH YIEFWKKIPP NEPYRVLLAD VRDRLYNTQE RARQLLANGY SDVPEESTFT
401: NLEQFLEPLE LCYRSLCACG DRPIADGSLL DFLRQVSTFG LSLVRLDIRQ ESDRHTDVLD VITRHVGVGS YKEWSEEKRQ EWLLSELSGK RPLFGPDLPK
501: TDEVADVLDT FHVISELPAD SFGAYIISMA TAPSDVLAVE LLQRECHVKS PLRVVPLFEK LADLESAPAS VARLFSIDWY RNRINGKQEV MIGYSDSGKD
601: AGRLSAAWQL YKAQEELVKV AKEFGVKLTM FHGRGGTVGR GGGPTHLAIL SQPPDTIHGS LRVTVQGEVI EQSFGEEHLC FRTLQRFTAA TLEHGMNPPV
701: APNPEWRALL DEMSVVATKE YRSLVFQDPR FVEYFRLATP ELEYGRMNIG SRPAKRKPSG GIESLRAIPW IFAWTQTRFH LPVWLGFGAA FKHVIEKDIR
801: NLQMLKDMYN GWPFFRVTLD LLEMVFAKGD PGIAALYDKL LVSEDLWPLG ERLRSKYEET KGFLLQVAGH KDLLEGDPYL RQRLKLRDSY ITTLNVSQAY
901: TLKRIRDPNY NVKVRPHLDK EIMESSKPAA ELVKLNPTSE YAPGLEDTLI LTMKGIAAGM QNTG

Best Arabidopsis Sequence Match ( AT1G53310.3 )
(BLAST)

001: MANRKLEKMA SIDVHLRQLV PGKVSEDDKL VEYDALLLDR FLDILQDLHG EDLRETVQEL YEHSAEYEGK HEPKKLEELG SVLTSLDPGD SIVIAKAFSH
101: MLNLANLAEE VQIAYRRRIK KLKKGDFVDE SSATTESDLE ETFKKLVGDL NKSPEEIFDA LKNQTVDLVL TAHPTQSVRR SLLQKHGRIR DCLAQLYAKD
201: ITPDDKQELD EALQREIQAA FRTDEIKRTP PTPQDEMRAG MSYFHETIWK GVPKFLRRVD TALKNIGIEE RVPYNAPLIQ FSSWMGGDRD GNPRVTPEVT
301: RDVCLLARMM AATMYFNQIE DLMFEMSMWR CNDELRARAD EVHANSRKDA AKHYIEFWKS IPTTEPYRVI LGDVRDKLYH TRERAHQLLS NGHSDVPVEA
401: TFINLEQFLE PLELCYRSLC SCGDRPIADG SLLDFLRQVS TFGLSLVRLD IRQESDRHTD VLDAITTHLD IGSYREWSEE RRQEWLLSEL SGKRPLFGSD
501: LPKTEEIADV LDTFHVIAEL PADSFGAYII SMATAPSDVL AVELLQRECR VKQPLRVVPL FEKLADLEAA PAAVARLFSV DWYKNRINGK QEVMIGYSDS
601: GKDAGRLSAA WQLYKAQEEL VKVAKEYGVK LTMFHGRGGT VGRGGGPTHL AILSQPPDTI NGSLRVTVQG EVIEQSFGEE HLCFRTLQRF TAATLEHGMR
701: PPISPKPEWR ALLDEMAVVA TEEYRSVVFQ EPRFVEYFRL ATPELEYGRM NIGSRPSKRK PSGGIESLRA IPWIFAWTQT RFHLPVWLGF GSAIRHVIEK
801: DVRNLHMLQD MYQHWPFFRV TIDLIEMVFA KGDPGIAALY DKLLVSEELW PFGEKLRANF EETKKLILQT AGHKDLLEGD PYLKQRLRLR DSYITTLNVC
901: QAYTLKRIRD PSYHVTLRPH ISKEIAESSK PAKELIELNP TSEYAPGLED TLILTMKGIA AGLQNTG

Arabidopsis Description

PPC1Phosphoenolpyruvate carboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.