CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27044	Soybean	nucleus	96.52	97.72
KRH55745	Soybean	cytosol, endoplasmic reticulum, nucleus	92.13	93.27
PGSC0003DMT400052608	Potato	cytosol	87.12	89.03
Solyc07g055060.2.1	Tomato	nucleus	87.53	88.8
KRH55092	Soybean	nucleus	86.2	87.18
CDX75798	Canola	cytosol	63.39	87.08
KRH26228	Soybean	nucleus	86.09	87.07
AT1G53310.3	Thale cress	cytosol	85.69	86.66
Bra030945.1-P	Field mustard	cytosol	85.38	86.62
CDY02513	Canola	cytosol	85.38	86.62
CDY25721	Canola	cytosol	78.63	86.31
KRH27345	Soybean	endoplasmic reticulum	85.28	86.25
KRH21974	Soybean	cytosol	85.17	86.14
CDX98516	Canola	cytosol	82.11	86.07
AT3G14940.1	Thale cress	cytosol	85.17	86.05
Bra001575.1-P	Field mustard	cytosol	85.07	86.04
CDY45929	Canola	cytosol	73.21	85.44
Bra027293.1-P	Field mustard	cytosol	84.46	85.42
CDX82457	Canola	cytosol	67.59	85.4
CDX97618	Canola	cytosol	67.28	84.79
KRH70911	Soybean	cytosol	14.42	39.39
KRH70922	Soybean	cytosol	14.11	34.5
KRH34779	Soybean	cytosol	32.92	31.2
KRH75540	Soybean	cytosol	33.03	30.59
KRH71121	Soybean	cytosol	32.72	30.33
KRH70920	Soybean	cytosol	15.34	29.53
KRH70915	Soybean	cytosol	18.3	26.32
KRH70912	Soybean	cytosol, golgi, nucleus	10.12	24.69
KRH70917	Soybean	cytosol	17.69	17.62
KRH71124	Soybean	cytosol	10.43	13.09

Protein Annotations

KEGG:00620+4.1.1.31	KEGG:00680+4.1.1.31	KEGG:00710+4.1.1.31	KEGG:00720+4.1.1.31	Gene3D:1.20.1440.90	MapMan:1.4.1.1
EMBL:ACUP02008404	EnsemblPlantsGene:GLYMA_13G290700	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005576
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006091	GO:GO:0006099
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008964	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0015977	GO:GO:0048046	GO:GO:0048366	UniProt:I1M3L8	EnsemblPlants:KRH22285
ProteinID:KRH22285	ProteinID:KRH22285.1	HAMAP:MF_00595	InterPro:PEPCASE_His_AS	InterPro:PEP_COase	InterPro:PEP_COase_Lys_AS
InterPro:PEP_COase_bac/pln-type	PFAM:PF00311	PRINTS:PR00150	ScanProsite:PS00393	ScanProsite:PS00781	PANTHER:PTHR30523
PANTHER:PTHR30523:SF12	MetaCyc:PWY-1622	MetaCyc:PWY-241	MetaCyc:PWY-5913	MetaCyc:PWY-6142	MetaCyc:PWY-6146
MetaCyc:PWY-6549	MetaCyc:PWY-7115	MetaCyc:PWY-7117	MetaCyc:PWY-7124	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	SUPFAM:SSF51621
UniParc:UPI000296E26E	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:39106079..39112900

Molecular Weight (calculated)

111885.0 Da

IEP (calculated)

6.277

GRAVY (calculated)

-0.429

Length

978 amino acids

Sequence
(BLAST)

001: MAARNIEKMA SIDAQLRLLA PRKVSDDDKL VEYDALLLDR FLDILQDLHG EDIRQTVQDC YELSAEYEGE HKPDKLEELG NMLTGLDAGD SIVIAKSFSH
101: MLNLANLAEE VQIAYRRRIK LLKKGDFADE NSAITESDIE ETFKKLVAQL KKTPQEIFDA LKNQTVDLVL TAHPTQSVRR SLLQKHGRLI ISVGDHSLQD
201: KGICLTQLYA KDITPDDKQE LDEALQREIQ AAFRTDEIRR TPPTPQDEMR AGMSYFHETI WKGVPQFLRR VDTALKNIGI NERVPYNAPV IQFSSWMGGD
301: RDGNPRVTPE VTRDVCLLAR MMAANVYFSQ IEDLMFELSM WRCTDELRDR AHELHRSSKR DAKHYIEFWK QVPPNEPYRV ILGDVRDKLY NTRERARQLL
401: ANGTSDIPEE TTFTYVEQFL EPLEQCYRSL CACGDRPIAD GSLLDFLRQV STFGLSLVRL DIRQESDRHT DVMDAITKHL EIGSYREWPE EKRQEWLLSE
501: LRGKRPLFGH DLPKTEEIND VLETFHVISE LPSDNFGAYI ISMATAPSDV LAVELLQREC HVKQPLRVVP LFEKLADLEA APAAVARLFS IDWYRDRING
601: KQEVMIGYSD SGKDAGRLSA AWALYKAQEE LVKVAKEYGV KLTMFHGRGG TVGRGGGPTH LAILSQPPDT IHGSLRVTVQ GEVIEQSFGE EHLCFRTLQR
701: FTAATLEHGM HPPVSPKPEW RALMDEMAVI ATKEYRSVVF KEPRFVEYFR CATPELEYGR MNIGSRPSKR KPSGGIESLR AIPWIFAWTQ TRFHLPVWLG
801: FGSAFKHVVE KDPKNLQMLQ DMYNQWPFFR VTLDLVEMVF AKGDPGIASL FDKLLVSEEL RPFGENLRSK FEETKRFLLQ VAGHKDILEG DPYLKQRLRL
901: RDSYITTLNV LQAYTLKRIR DPDYHVKLRP HLSKDYMESS KPAAELVKLN PKSEYAPGLE DTLILTMKGI AAGMQNTG

Best Arabidopsis Sequence Match ( AT2G42600.3 )
(BLAST)

001: MAARNLEKMA SIDAQLRLLA PGKVSEDDKL IEYDALLLDR FLDILQDLHG EDVREFVQEC YEVAADYDGN RNTEKLEELG NMLTSLDPGD SIVVTKSFSN
101: MLSLANLAEE VQIAYRRRIK KLKKGDFADE ASATTESDIE ETLKRLLQLN KTPEEVFDAL KNQTVDLVLT AHPTQSVRRS LLQKFGRIRD CLTQLYAKDI
201: TPDDKQELDE ALQREIQAAF RTDEIRRTPP TPQDEMRAGM SYFHETIWKG VPKFLRRVDT ALKNIGINER VPYNAPLIQF SSWMGGDRDG NPRVTPEVTR
301: DVCLLARMMA ANLYFSQIED LMFEMSMWRC NEELRVRAER QRCAKRDAKH YIEFWKQIPA NEPYRAILGD VRDKLYNTRE RARQLLSSGV SDVPEDAVFT
401: SVDQFLEPLE LCYRSLCDCG DRPIADGSLL DFLRQVSTFG LALVKLDIRQ ESERHSDVLD AITTHLGIGS YKEWSEDKRQ EWLLSELSGK RPLFGPDLPK
501: TEEVADVLDT FKVISELPSD SFGAYIISMA TAPSDVLAVE LLQRECGITD PLRVVPLFEK LADLESAPAA VARLFSIEWY RNRINGKQEV MIGYSDSGKD
601: AGRLSAAWQL YKTQEELVKV AKEYGVKLTM FHGRGGTVGR GGGPTHLAIL SQPPDTIHGQ LRVTVQGEVI EQSFGEEHLC FRTLQRFTAA TLEHGMHPPV
701: SPKPEWRVLM DEMAIIATEE YRSVVFKEPR FVEYFRLATP ELEYGRMNIG SRPSKRKPSG GIESLRAIPW IFAWTQTRFH LPVWLGFGGA FKRVIQKDSK
801: NLNMLKEMYN QWPFFRVTID LVEMVFAKGD PGIAALYDRL LVSEELQPFG EQLRVNYQET RRLLLQVAGH KDILEGDPYL RQRLQLRDPY ITTLNVCQAY
901: TLKQIRDPSF HVKVRPHLSK DYMESSPAAE LVKLNPKSEY APGLEDTVIL TMKGIAAGMQ NTG

Arabidopsis Description

PPC2PPC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VV64]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.