CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26228	Soybean	nucleus	98.55	98.55
KRH21974	Soybean	cytosol	92.35	92.35
KRH27345	Soybean	endoplasmic reticulum	92.35	92.35
VIT_19s0014g01390.t01	Wine grape	cytosol	90.49	90.86
GSMUA_Achr4P08030_001	Banana	cytosol	86.04	88.89
GSMUA_Achr6P26850_001	Banana	cytosol	86.25	88.72
VIT_12s0028g02180.t01	Wine grape	cytosol	88.52	88.7
PGSC0003DMT400039809	Potato	cytosol	88.21	88.39
KRH27044	Soybean	nucleus	87.9	87.99
PGSC0003DMT400054791	Potato	cytosol	87.69	87.97
Solyc10g007290.2.1	Tomato	cytosol, plastid	87.59	87.86
Solyc12g014250.1.1	Tomato	cytosol, nucleus, plastid, unclear	87.59	87.77
KRH55745	Soybean	cytosol, endoplasmic reticulum, nucleus	87.28	87.37
EES13699	Sorghum	cytosol	86.66	86.93
AT1G53310.3	Thale cress	cytosol	86.87	86.87
CDY02513	Canola	cytosol	86.56	86.83
Bra030945.1-P	Field mustard	cytosol	86.56	86.83
AT3G14940.1	Thale cress	cytosol	86.87	86.78
CDX98516	Canola	cytosol	83.66	86.71
CDY25721	Canola	cytosol	79.73	86.53
CDX75798	Canola	cytosol	63.6	86.38
EER98700	Sorghum	cytosol	86.35	86.35
KRH22285	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	87.18	86.2
Bra027293.1-P	Field mustard	cytosol	86.14	86.14
CDX97618	Canola	cytosol	69.08	86.08
Bra001575.1-P	Field mustard	cytosol	86.04	86.04
Os08t0366000-01	Rice	cytosol, plasma membrane	85.63	85.89
CDX82457	Canola	cytosol	68.67	85.79
PGSC0003DMT400032245	Potato	cytosol	85.42	85.68
Os01t0758300-01	Rice	cytosol, plasma membrane	81.7	85.5
CDY45929	Canola	cytosol	74.04	85.44
KXG33409	Sorghum	cytosol	85.01	85.09
Zm00001d012702_P008	Maize	cytosol	84.69	84.78
TraesCS5A01G181800.1	Wheat	cytosol, golgi	85.21	84.77
HORVU5Hr1G055350.3	Barley	cytosol	85.21	84.77
Zm00001d020057_P004	Maize	cytosol, extracellular	85.73	84.76
TraesCS5B01G179800.1	Wheat	cytosol, extracellular, golgi, unclear	85.11	84.67
TraesCS5D01G186200.1	Wheat	cytosol	85.01	84.57
HORVU3Hr1G073020.2	Barley	cytosol	84.07	84.16
GSMUA_Achr10P...	Banana	cytosol	81.59	84.03
GSMUA_Achr6P14490_001	Banana	cytosol	81.59	84.03
Solyc07g062530.2.1	Tomato	cytosol, nucleus, plastid	83.66	83.92
TraesCS3B01G329800.1	Wheat	cytosol, golgi	83.66	83.75
TraesCS3A01G306700.1	Wheat	cytosol	83.35	83.44
TraesCS3D01G295200.1	Wheat	cytosol	83.35	83.44
GSMUA_Achr9P06420_001	Banana	cytosol	81.8	81.63
KRH70911	Soybean	cytosol	14.89	40.22
KRH70922	Soybean	cytosol	14.27	34.5
KRH34779	Soybean	cytosol	32.68	30.62
KRH75540	Soybean	cytosol	33.09	30.3
KRH71121	Soybean	cytosol	32.78	30.05
KRH70920	Soybean	cytosol	15.72	29.92
KRH70915	Soybean	cytosol	18.51	26.32
KRH70912	Soybean	cytosol, golgi, nucleus	10.65	25.69
KRH70917	Soybean	cytosol	17.99	17.72
KRH71124	Soybean	cytosol	10.96	13.61

Protein Annotations

KEGG:00620+4.1.1.31	KEGG:00680+4.1.1.31	KEGG:00710+4.1.1.31	KEGG:00720+4.1.1.31	Gene3D:1.20.1440.90	MapMan:1.4.1.1
EntrezGene:100820574	EMBL:ACUP02003879	EnsemblPlantsGene:GLYMA_06G229900	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006091
GO:GO:0006099	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008964	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0015977	GO:GO:0048046	GO:GO:0048366	UniProt:I1KDL4
EnsemblPlants:KRH55092	ProteinID:KRH55092	ProteinID:KRH55092.1	EMBL:LC006107	HAMAP:MF_00595	InterPro:PEPCASE_His_AS
InterPro:PEP_COase	InterPro:PEP_COase_Lys_AS	InterPro:PEP_COase_bac/pln-type	PFAM:PF00311	PRINTS:PR00150	ScanProsite:PS00393
ScanProsite:PS00781	PANTHER:PTHR30523	PANTHER:PTHR30523:SF11	MetaCyc:PWY-1622	MetaCyc:PWY-241	MetaCyc:PWY-5913
MetaCyc:PWY-6142	MetaCyc:PWY-6146	MetaCyc:PWY-6549	MetaCyc:PWY-7115	MetaCyc:PWY-7117	MetaCyc:PWY-7124
InterPro:Pyrv/PenolPyrv_Kinase-like_dom	SUPFAM:SSF51621	UniParc:UPI0002339BAC	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:35345378..35353806

Molecular Weight (calculated)

110657.0 Da

IEP (calculated)

5.933

GRAVY (calculated)

-0.418

Length

967 amino acids

Sequence
(BLAST)

001: MANRNLEKMA SIDAQLRLLV PAKVSEDDKL VEYDALLLDR FLDILQDLHG EDLKETVQEV YELSAEYEGK HDPKKLEELG NLITSLDAGD SIVVAKSFSH
101: MLNLANLAEE VQIAHSRRNK LKKGDFADEN NATTESDIEE TLKKLVGDMK KSPQEVFNAL KNQTVDLVLT AHPTQSVRRS LLQKHGRIRN NLTQLYAKDI
201: TPDDKQELDE ALQREIQAAF RTDEIRRTPP TPQDEMRAGM SYFHETIWKG VPTFLRRVDT ALKNIGINER VPYNAPLIQF SSWMGGDRDG NPRVTPEVTR
301: DVCLLARMMA ANLYYSQIEN LMFELSMWRC NDELRVRADE LNRSSKKNSV AKHYIEFWKV IPPNEPYRVL LGEVRNRLYH TRERSRHLLA HGYSDIPEEE
401: TFTNVEEFLE PLELCYRSLC ACGDRAIADG SLLDFLRQVS TFGLSLVRLD IRQESDRHTD VLDAITKHLE IGSYQEWSEE KRQQWLLSEL SGKRPLFGPD
501: LPQTEEIRDV LDTFHVIAEL PPDNFGAYII SMATAPSDVL AVELLQRECH VKHPLRVVPL FEKLADLEAA PAALARLFSV DWYRNRINGK QEVMIGYSDS
601: GKDAGRFSAA WQLYKAQEEL IKVAKEYGVK LTMFHGRGGT VGRGGGPTHL AILSQPPDTI HGSLRVTVQG EVIEQSFGEQ HLCFRTLQRF TAATLEHGMH
701: PPISPKPEWR ALMDEMAVIA TEEYRSIVFK EPRFVEYFRL ATPELEYGRM NIGSRPAKRR PSGGIETLRA IPWIFAWTQT RFHLPVWLGF GAAFEHVIEK
801: DVRNIHVLQE MYNQWPFFRV TIDLVEMVFA KGDPGIAALY DRLLVSEDLW SFGEQLRTKY EETKEFLLQV AGHRDLLEGD PYLKQRLRLR DSYITTLNVC
901: QAYTLKRIRD PNYNVKLRPH ISKESIEVSK PADELITLNP TSEYAPGLED TLILTMKGIA AGLQNTG

Best Arabidopsis Sequence Match ( AT3G14940.2 )
(BLAST)

001: MAGRNIEKMA SIDAQLRQLV PAKVSEDDKL VEYDALLLDR FLDILQDLHG EDLRETVQEL YELSAEYEGK REPSKLEELG SVLTSLDPGD SIVISKAFSH
101: MLNLANLAEE VQIAHRRRIK KLKKGDFVDE SSATTESDIE ETFKRLVSDL GKSPEEIFDA LKNQTVDLVL TAHPTQSVRR SLLQKHGRIR DCLAQLYAKD
201: ITPDDKQELD ESLQREIQAA FRTDEIRRTP PTPQDEMRAG MSYFHETIWK GVPKFLRRVD TALKNIGIDE RVPYNAPLIQ FSSWMGGDRD GNPRVTPEVT
301: RDVCLLARMM AANLYYNQIE NLMFELSMWR CTDEFRVRAD ELHRNSRKDA AKHYIEFWKT IPPTEPYRVI LGDVRDKLYH TRERSRQLLS NGISDIPEEA
401: TFTNVEQFLE PLELCYRSLC SCGDSPIADG SLLDFLRQVS TFGLSLVRLD IRQESERHTD VLDAITKHLD IGSSYRDWSE EGRQEWLLAE LSGKRPLFGP
501: DLPKTEEISD VLDTFKVISE LPSDCFGAYI ISMATSPSDV LAVELLQREC HVKNPLRVVP LFEKLADLEA APAAVARLFS IDWYKNRING KQEVMIGYSD
601: SGKDAGRLSA AWELYKAQEE LVKVAKKYGV KLTMFHGRGG TVGRGGGPTH LAILSQPPDT VNGSLRVTVQ GEVIEQSFGE AHLCFRTLQR FTAATLEHGM
701: NPPISPKPEW RALLDEMAVV ATEEYRSVVF QEPRFVEYFR LATPELEYGR MNIGSRPSKR KPSGGIESLR AIPWIFAWTQ TRFHLPVWLG FGAAFRYAIK
801: KDVRNLHMLQ DMYKQWPFFR VTIDLIEMVF AKGDPGIAAL YDKLLVSEDL WAFGEKLRAN FDETKNLVLQ TAGHKDLLEG DPYLKQRLRL RDSYITTLNV
901: CQAYTLKRIR DANYNVTLRP HISKEIMQSS KSAQELVKLN PTSEYAPGLE DTLILTMKGI AAGLQNTG

Arabidopsis Description

PPC3Phosphoenolpyruvate carboxylase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q84VW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.