Factsheet for PGSC0003DMT400039809

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g014250.1.1	Tomato	cytosol, nucleus, plastid, unclear	98.65	98.65
PGSC0003DMT400054791	Potato	cytosol	92.33	92.43
VIT_19s0014g01390.t01	Wine grape	cytosol	91.19	91.38
PGSC0003DMT400032245	Potato	cytosol	88.6	88.69
KRH26228	Soybean	nucleus	88.6	88.42
GSMUA_Achr4P08030_001	Banana	cytosol	85.7	88.35
GSMUA_Achr6P26850_001	Banana	cytosol	86.01	88.3
KRH55092	Soybean	nucleus	88.39	88.21
AT1G53310.3	Thale cress	cytosol	88.08	87.9
CDY02513	Canola	cytosol	87.67	87.76
Bra030945.1-P	Field mustard	cytosol	87.67	87.76
AT3G14940.1	Thale cress	cytosol	87.88	87.6
EES13699	Sorghum	cytosol	87.25	87.34
CDX82457	Canola	cytosol	70.05	87.34
KRH27345	Soybean	endoplasmic reticulum	87.46	87.28
Bra001575.1-P	Field mustard	cytosol	87.36	87.18
PGSC0003DMT400052608	Potato	cytosol	86.42	87.15
CDY25721	Canola	cytosol	80.41	87.09
Bra027293.1-P	Field mustard	cytosol	87.25	87.07
CDX98516	Canola	cytosol	84.15	87.03
CDX97618	Canola	cytosol	69.95	86.98
KRH21974	Soybean	cytosol	87.15	86.97
Os08t0366000-01	Rice	cytosol, plasma membrane	86.63	86.72
CDX75798	Canola	cytosol	63.83	86.52
CDY45929	Canola	cytosol	75.03	86.4
EER98700	Sorghum	cytosol	86.53	86.35
KXG33409	Sorghum	cytosol	86.22	86.13
Zm00001d012702_P008	Maize	cytosol	85.7	85.61
Os01t0758300-01	Rice	cytosol, plasma membrane	81.87	85.5
Zm00001d020057_P004	Maize	cytosol, extracellular	86.01	84.87
HORVU3Hr1G073020.2	Barley	cytosol	84.56	84.47
TraesCS3B01G329800.1	Wheat	cytosol, golgi	84.35	84.27
HORVU5Hr1G055350.3	Barley	cytosol	84.77	84.16
TraesCS5A01G181800.1	Wheat	cytosol, golgi	84.66	84.05
TraesCS5B01G179800.1	Wheat	cytosol, extracellular, golgi, unclear	84.66	84.05
TraesCS3A01G306700.1	Wheat	cytosol	84.04	83.95
TraesCS5D01G186200.1	Wheat	cytosol	84.56	83.95
TraesCS3D01G295200.1	Wheat	cytosol	83.94	83.85
GSMUA_Achr6P14490_001	Banana	cytosol	81.24	83.49
GSMUA_Achr10P...	Banana	cytosol	80.73	82.96
GSMUA_Achr9P06420_001	Banana	cytosol	80.62	80.29
PGSC0003DMT400019322	Potato	cytosol	33.58	30.86

Protein Annotations

KEGG:00620+4.1.1.31	KEGG:00680+4.1.1.31	KEGG:00710+4.1.1.31	KEGG:00720+4.1.1.31	Gene3D:1.20.1440.90	MapMan:1.4.1.1
EntrezGene:102603323	ProteinID:CAA47437	ProteinID:CAA47437.1	ProteinID:CAA62469	ProteinID:CAA62469.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0008964	GO:GO:0009987
GO:GO:0015977	GO:GO:0015979	GO:GO:0016829	UniProt:M1B8U0	HAMAP:MF_00595	InterPro:PEPCASE_His_AS
InterPro:PEP_COase	InterPro:PEP_COase_Lys_AS	InterPro:PEP_COase_bac/pln-type	PFAM:PF00311	EnsemblPlantsGene:PGSC0003DMG400015385	PGSC:PGSC0003DMG400015385
EnsemblPlants:PGSC0003DMT400039809	PRINTS:PR00150	ScanProsite:PS00393	ScanProsite:PS00781	PANTHER:PTHR30523	PANTHER:PTHR30523:SF11
InterPro:Pyrv/PenolPyrv_Kinase-like_dom	SUPFAM:SSF51621	UniParc:UPI000294DE60	EMBL:X67053	EMBL:X90982	RefSeq:XP_015169644.1
SEG:seg	:	:	:	:	:

Description

Phosphoenolpyruvate carboxylase [Source:PGSC_GENE;Acc:PGSC0003DMG400015385]

Coordinates

chr12:+:239059..245128

Molecular Weight (calculated)

110247.0 Da

IEP (calculated)

5.566

GRAVY (calculated)

-0.400

Length

965 amino acids

Sequence
(BLAST)

001: MTTRNLEKLA SIDAQLRQLV PAKVSEDDKL VEYDALLLDR FLDILQDLHG EDLKETVQDC YELSAEYEAK HDPKKLEELG NVLTSLDPGD SIVIAKAFSH
101: MLNLANLAEE VQIAYRRRQK LKKKGDFGDE SNATTESDIE ETFKKLVGDL KKSPQEVFDA IKNQTVDLVL TAHPTQSVRR SLLQKHGRIR DCLAQLYAKD
201: ITPDDKQELD EALQREIQAA FRTDEIRRTP PTPQDEMRAG MSYFHETIWK GVPKFLRRVD TALKNIGINE RVPYNAPLIQ FSSWMGGDRD GNPRVTPEVT
301: RDVCLLARMM AANLYYSQIE DLMFELSMWR CNEELRVRAD DLQRSSRRDE KHYIEFWKQV PPNEPYRVIL GDVRDKLYQT RERARQLLGH GYSEIPEEAT
401: YTNIEQFLEP LELCYRSLCA CGDLSIADGS LLDFLRQVST FGLSLVRLDI RQESDRHTDV LDAITQHLEI GSYRDWSEER RQEWLLSELS GKRPLFGPDL
501: PKTEEIADVL DTFHVIAELP ADCFGAYIIS MATAPSDVLA VELLQRECRV RQPLRVVPLF EKLADLDAAP AAVARLFSIE WYRNRINGKQ EVMIGYSDSG
601: KDAGRLSAAW QLYKAQEELI QVAKEFDVKL TMFHGRGGTV GRGGGPAHLA ILSQPPETIH GSLRVTVQGE VIEQSFGEEH LCFRTLQRFT AATLEHGMHP
701: PVSPKPEWRA LMDEIAVVAT EKYRSIVFKE PRFVEYFRLA TPELEYGRMN IGSRPSKRKP SGGIESLRAI PWIFAWTQTR FHLPVWLGFG AAFKYAIGKD
801: IKNLRMLQEM YNAWPFFRVT IDLVEMVFAK GDPGIAALFD KLLVSEDLWS FGELLRSKYE ETKSLLLQIA GHKDLLEGDP YLKQRLRLRD SYITTLNVCQ
901: AYTLKRIRDP DYSVTPRPHI SKEYMEAKPA TELVNLNPTS EYAPGLEDTL ILTMKGIAAG MQNTG

Best Arabidopsis Sequence Match ( AT1G53310.3 )
(BLAST)

001: MANRKLEKMA SIDVHLRQLV PGKVSEDDKL VEYDALLLDR FLDILQDLHG EDLRETVQEL YEHSAEYEGK HEPKKLEELG SVLTSLDPGD SIVIAKAFSH
101: MLNLANLAEE VQIAYRRRIK KLKKGDFVDE SSATTESDLE ETFKKLVGDL NKSPEEIFDA LKNQTVDLVL TAHPTQSVRR SLLQKHGRIR DCLAQLYAKD
201: ITPDDKQELD EALQREIQAA FRTDEIKRTP PTPQDEMRAG MSYFHETIWK GVPKFLRRVD TALKNIGIEE RVPYNAPLIQ FSSWMGGDRD GNPRVTPEVT
301: RDVCLLARMM AATMYFNQIE DLMFEMSMWR CNDELRARAD EVHANSRKDA AKHYIEFWKS IPTTEPYRVI LGDVRDKLYH TRERAHQLLS NGHSDVPVEA
401: TFINLEQFLE PLELCYRSLC SCGDRPIADG SLLDFLRQVS TFGLSLVRLD IRQESDRHTD VLDAITTHLD IGSYREWSEE RRQEWLLSEL SGKRPLFGSD
501: LPKTEEIADV LDTFHVIAEL PADSFGAYII SMATAPSDVL AVELLQRECR VKQPLRVVPL FEKLADLEAA PAAVARLFSV DWYKNRINGK QEVMIGYSDS
601: GKDAGRLSAA WQLYKAQEEL VKVAKEYGVK LTMFHGRGGT VGRGGGPTHL AILSQPPDTI NGSLRVTVQG EVIEQSFGEE HLCFRTLQRF TAATLEHGMR
701: PPISPKPEWR ALLDEMAVVA TEEYRSVVFQ EPRFVEYFRL ATPELEYGRM NIGSRPSKRK PSGGIESLRA IPWIFAWTQT RFHLPVWLGF GSAIRHVIEK
801: DVRNLHMLQD MYQHWPFFRV TIDLIEMVFA KGDPGIAALY DKLLVSEELW PFGEKLRANF EETKKLILQT AGHKDLLEGD PYLKQRLRLR DSYITTLNVC
901: QAYTLKRIRD PSYHVTLRPH ISKEIAESSK PAKELIELNP TSEYAPGLED TLILTMKGIA AGLQNTG

Arabidopsis Description

PPC1Phosphoenolpyruvate carboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.