CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 27780359
endoplasmic reticulum: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21974	Soybean	cytosol	98.86	98.86
KRH26228	Soybean	nucleus	92.45	92.45
KRH55092	Soybean	nucleus	92.35	92.35
VIT_19s0014g01390.t01	Wine grape	cytosol	88.52	88.89
GSMUA_Achr4P08030_001	Banana	cytosol	85.11	87.93
GSMUA_Achr6P26850_001	Banana	cytosol	85.32	87.77
VIT_12s0028g02180.t01	Wine grape	cytosol	87.28	87.46
PGSC0003DMT400039809	Potato	cytosol	87.28	87.46
Solyc12g014250.1.1	Tomato	cytosol, nucleus, plastid, unclear	86.76	86.94
CDX75798	Canola	cytosol	64.01	86.94
KRH27044	Soybean	nucleus	86.76	86.85
PGSC0003DMT400054791	Potato	cytosol	86.14	86.41
Solyc10g007290.2.1	Tomato	cytosol, plastid	86.14	86.41
KRH55745	Soybean	cytosol, endoplasmic reticulum, nucleus	86.04	86.13
EES13699	Sorghum	cytosol	85.73	86.0
EER98700	Sorghum	cytosol	85.52	85.52
Os08t0366000-01	Rice	cytosol, plasma membrane	85.11	85.37
KRH22285	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	86.25	85.28
Bra001575.1-P	Field mustard	cytosol	85.21	85.21
CDX98516	Canola	cytosol	82.21	85.21
CDX82457	Canola	cytosol	68.15	85.14
CDY02513	Canola	cytosol	84.8	85.06
Bra030945.1-P	Field mustard	cytosol	84.8	85.06
AT3G14940.1	Thale cress	cytosol	85.11	85.02
PGSC0003DMT400032245	Potato	cytosol	84.49	84.75
CDY25721	Canola	cytosol	78.08	84.74
Bra027293.1-P	Field mustard	cytosol	84.69	84.69
CDX97618	Canola	cytosol	67.94	84.66
AT1G53310.3	Thale cress	cytosol	84.49	84.49
Zm00001d020057_P004	Maize	cytosol, extracellular	85.01	84.05
Os01t0758300-01	Rice	cytosol, plasma membrane	80.14	83.87
CDY45929	Canola	cytosol	72.6	83.77
TraesCS5A01G181800.1	Wheat	cytosol, golgi	84.18	83.74
HORVU5Hr1G055350.3	Barley	cytosol	84.18	83.74
TraesCS5B01G179800.1	Wheat	cytosol, extracellular, golgi, unclear	84.07	83.64
TraesCS5D01G186200.1	Wheat	cytosol	83.97	83.54
GSMUA_Achr6P14490_001	Banana	cytosol	81.08	83.49
GSMUA_Achr10P...	Banana	cytosol	80.97	83.39
KXG33409	Sorghum	cytosol	83.25	83.33
HORVU3Hr1G073020.2	Barley	cytosol	83.14	83.23
Solyc07g062530.2.1	Tomato	cytosol, nucleus, plastid	82.94	83.19
Zm00001d012702_P008	Maize	cytosol	83.04	83.13
TraesCS3B01G329800.1	Wheat	cytosol, golgi	82.73	82.82
TraesCS3A01G306700.1	Wheat	cytosol	82.21	82.3
TraesCS3D01G295200.1	Wheat	cytosol	82.21	82.3
GSMUA_Achr9P06420_001	Banana	cytosol	81.08	80.91
KRH70911	Soybean	cytosol	14.68	39.66
KRH70922	Soybean	cytosol	14.17	34.25
KRH34779	Soybean	cytosol	32.58	30.52
KRH71121	Soybean	cytosol	32.78	30.05
KRH75540	Soybean	cytosol	32.78	30.02
KRH70920	Soybean	cytosol	15.51	29.53
KRH70915	Soybean	cytosol	18.51	26.32
KRH70912	Soybean	cytosol, golgi, nucleus	10.44	25.19
KRH70917	Soybean	cytosol	18.1	17.82
KRH71124	Soybean	cytosol	10.44	12.97

Protein Annotations

KEGG:00620+4.1.1.31	KEGG:00680+4.1.1.31	KEGG:00710+4.1.1.31	KEGG:00720+4.1.1.31	Gene3D:1.20.1440.90	MapMan:1.4.1.1
EntrezGene:100805069	UniProt:A0A0R0H967	ncoils:Coil	EMBL:D13998	EnsemblPlantsGene:GLYMA_12G229400	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006091	GO:GO:0006099	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008964	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015977	GO:GO:0015979
GO:GO:0016829	GO:GO:0048046	GO:GO:0048366	ProteinID:KRH27344.1	EnsemblPlants:KRH27345	ProteinID:KRH27345
ProteinID:KRH27345.1	ProteinID:KRH27346.1	HAMAP:MF_00595	UniProt:P51061	InterPro:PEPCASE_His_AS	InterPro:PEP_COase
InterPro:PEP_COase_Lys_AS	InterPro:PEP_COase_bac/pln-type	PFAM:PF00311	PRINTS:PR00150	ScanProsite:PS00393	ScanProsite:PS00781
PANTHER:PTHR30523	PANTHER:PTHR30523:SF11	MetaCyc:PWY-1622	MetaCyc:PWY-241	MetaCyc:PWY-5913	MetaCyc:PWY-6142
MetaCyc:PWY-6146	MetaCyc:PWY-6549	MetaCyc:PWY-7115	MetaCyc:PWY-7117	MetaCyc:PWY-7124	InterPro:Pyrv/PenolPyrv_Kinase-like_dom
SUPFAM:SSF51621	UniParc:UPI0000126ECB	SEG:seg	:	:	:

Description

PPC1hypothetical protein

Coordinates

chr12:-:38938314..38944919

Molecular Weight (calculated)

110767.0 Da

IEP (calculated)

6.424

GRAVY (calculated)

-0.449

Length

967 amino acids

Sequence
(BLAST)

001: MATRNLEKMA SIDAQLRQLA PAKVSEDDKL IEYDALLLDR FLDILQDLHG EDLKETVQEV YELSAEYEGK HDPKKLEELG NLITSLDAGD SILVAKSFSH
101: MLNLANLAEE VQISRRRRNK LKKGDFADEN NATTESDIEE TLKKLVFDLK KSPQEVFDAL KNQTVDLVLT AHPTQSIRRS LLQKHGRIRN CLSQLYAKDI
201: TPDDKQELDE ALQREIQAAF RTDEIRRTPP TPQDEMRAGM SYFHETIWNG VPRFLRRVDT ALNNIGIKER VPYNAPLIQF SSWMGGDRDG NPRVTPEVTR
301: DVCLLARMMA ANLYYSQIED LMFELSMWRC NDELRVRAEE LHRSSKKDEV AKHYIEFWKK VPPNEPYRVV LGEVRDRLYQ TRERSRHLLS NGYSDIPEEA
401: TFTNVEEFLE SLELCYRSLC ACGDRAIADG SLLDFMRQVS TFGLSLVRLD IRQESDRHTD VLDAITKHLE IGSYQEWSEE KRQEWLLSEL SGKRPLFGPD
501: LPQTEEIRDV LDTFHVIAEL PPDNFGAYII SMATAPSDVL AVELLQRECH IKHPLRVVPL FEKLADLEAA PAALARLFSI DWYRNRINGK QEVMIGYSDS
601: GKDAGRFSAA WQLYKAQEEL INVAKKFGVK LTMFHGRGGT VGRGGGPTHL AILSQPPDTI HGSLRVTVQG EVIEQSFGEQ HLCFRTLQRF TAATLEHGMH
701: PPISPKPEWR ALMDQMAVIA TEEYRSIVFK EPRFVEYFRL ATPELEYGRM NIGSRPAKRR PSGGIETLRA IPWIFAWTQT RFHLPVWLGF GAAFKKVIEE
801: NVKNLNMLQE MYNQWPFFRV TLDLVEMVFA KGDPKIAALN DRLLVSKDLW PFGDQLRNKY EETRKLLLQV AGHKEILEGD PYLKQRLRLR HAPITTLNIV
901: QAYTLKRIRD PNYNVKVRPR ISKESAEASK SADELVKLNP TSEYAPGLED TLILTMKGIA AGMQNTG

Best Arabidopsis Sequence Match ( AT3G14940.2 )
(BLAST)

001: MAGRNIEKMA SIDAQLRQLV PAKVSEDDKL VEYDALLLDR FLDILQDLHG EDLRETVQEL YELSAEYEGK REPSKLEELG SVLTSLDPGD SIVISKAFSH
101: MLNLANLAEE VQIAHRRRIK KLKKGDFVDE SSATTESDIE ETFKRLVSDL GKSPEEIFDA LKNQTVDLVL TAHPTQSVRR SLLQKHGRIR DCLAQLYAKD
201: ITPDDKQELD ESLQREIQAA FRTDEIRRTP PTPQDEMRAG MSYFHETIWK GVPKFLRRVD TALKNIGIDE RVPYNAPLIQ FSSWMGGDRD GNPRVTPEVT
301: RDVCLLARMM AANLYYNQIE NLMFELSMWR CTDEFRVRAD ELHRNSRKDA AKHYIEFWKT IPPTEPYRVI LGDVRDKLYH TRERSRQLLS NGISDIPEEA
401: TFTNVEQFLE PLELCYRSLC SCGDSPIADG SLLDFLRQVS TFGLSLVRLD IRQESERHTD VLDAITKHLD IGSSYRDWSE EGRQEWLLAE LSGKRPLFGP
501: DLPKTEEISD VLDTFKVISE LPSDCFGAYI ISMATSPSDV LAVELLQREC HVKNPLRVVP LFEKLADLEA APAAVARLFS IDWYKNRING KQEVMIGYSD
601: SGKDAGRLSA AWELYKAQEE LVKVAKKYGV KLTMFHGRGG TVGRGGGPTH LAILSQPPDT VNGSLRVTVQ GEVIEQSFGE AHLCFRTLQR FTAATLEHGM
701: NPPISPKPEW RALLDEMAVV ATEEYRSVVF QEPRFVEYFR LATPELEYGR MNIGSRPSKR KPSGGIESLR AIPWIFAWTQ TRFHLPVWLG FGAAFRYAIK
801: KDVRNLHMLQ DMYKQWPFFR VTIDLIEMVF AKGDPGIAAL YDKLLVSEDL WAFGEKLRAN FDETKNLVLQ TAGHKDLLEG DPYLKQRLRL RDSYITTLNV
901: CQAYTLKRIR DANYNVTLRP HISKEIMQSS KSAQELVKLN PTSEYAPGLE DTLILTMKGI AAGLQNTG

Arabidopsis Description

PPC3Phosphoenolpyruvate carboxylase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q84VW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.