CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22285	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	97.72	96.52
KRH55745	Soybean	cytosol, endoplasmic reticulum, nucleus	93.37	93.37
PGSC0003DMT400052608	Potato	cytosol	88.61	89.45
Solyc07g055060.2.1	Tomato	nucleus	89.03	89.21
CDX75798	Canola	cytosol	64.8	87.92
KRH55092	Soybean	nucleus	87.99	87.9
KRH26228	Soybean	nucleus	87.89	87.8
AT1G53310.3	Thale cress	cytosol	87.27	87.18
Bra030945.1-P	Field mustard	cytosol	86.85	87.03
CDY02513	Canola	cytosol	86.85	87.03
AT3G14940.1	Thale cress	cytosol	87.06	86.88
CDX98516	Canola	cytosol	83.85	86.82
KRH27345	Soybean	endoplasmic reticulum	86.85	86.76
CDY25721	Canola	cytosol	80.02	86.76
Bra001575.1-P	Field mustard	cytosol	86.75	86.66
KRH21974	Soybean	cytosol	86.65	86.56
Bra027293.1-P	Field mustard	cytosol	86.23	86.14
CDX82457	Canola	cytosol	68.94	86.05
CDY45929	Canola	cytosol	74.64	86.04
CDX97618	Canola	cytosol	68.74	85.57
KRH70911	Soybean	cytosol	14.7	39.66
KRH70922	Soybean	cytosol	14.49	35.0
KRH34779	Soybean	cytosol	33.44	31.3
KRH75540	Soybean	cytosol	33.54	30.68
KRH71121	Soybean	cytosol	33.23	30.43
KRH70920	Soybean	cytosol	15.73	29.92
KRH70915	Soybean	cytosol	18.74	26.62
KRH70912	Soybean	cytosol, golgi, nucleus	10.35	24.94
KRH70917	Soybean	cytosol	18.12	17.82
KRH71124	Soybean	cytosol	10.46	12.97

Protein Annotations

KEGG:00620+4.1.1.31	KEGG:00680+4.1.1.31	KEGG:00710+4.1.1.31	KEGG:00720+4.1.1.31	Gene3D:1.20.1440.90	MapMan:1.4.1.1
EntrezGene:547756	EMBL:ACUP02007762	EMBL:AY563044	EnsemblPlantsGene:GLYMA_12G210600	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006091	GO:GO:0006099	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008964
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015977	GO:GO:0016829	GO:GO:0048046
GO:GO:0048366	EnsemblPlants:KRH27044	ProteinID:KRH27044	ProteinID:KRH27044.1	HAMAP:MF_00595	InterPro:PEPCASE_His_AS
InterPro:PEP_COase	InterPro:PEP_COase_Lys_AS	InterPro:PEP_COase_bac/pln-type	PFAM:PF00311	PRINTS:PR00150	ScanProsite:PS00393
ScanProsite:PS00781	PANTHER:PTHR30523	PANTHER:PTHR30523:SF12	MetaCyc:PWY-1622	MetaCyc:PWY-241	MetaCyc:PWY-5913
MetaCyc:PWY-6142	MetaCyc:PWY-6146	MetaCyc:PWY-6549	MetaCyc:PWY-7115	MetaCyc:PWY-7117	MetaCyc:PWY-7124
InterPro:Pyrv/PenolPyrv_Kinase-like_dom	UniProt:Q6Q2Z8	SUPFAM:SSF51621	UniParc:UPI000034EC4E	SEG:seg	:

Description

hypothetical protein

Coordinates

chr12:-:36952133..36958451

Molecular Weight (calculated)

110547.0 Da

IEP (calculated)

6.365

GRAVY (calculated)

-0.419

Length

966 amino acids

Sequence
(BLAST)

001: MAARNIEKMA SIDAQLRLLA PRKVSDDDKL VEYDALLLDR FLDILQDLHG EDIRQTVQDC YELSAEYEGE HKPEKLEELG NMLTGLDAGD SIVIAKSFSH
101: MLNLANLAEE VQIAYRRRIK LLKKGDFADE NSAITESDIE ETFKKLVAQL KKTPQEIFDA LKNQTVDLVL TAHPTQSVRR SLLQKHGRIR NCLTQLYAKD
201: ITPDDKQELD EALQREIQAA FRTDEIRRTP PTPQDEMRAG MSYFHETIWK GVPQFLRRVD TALKNIGINE RVPYNAPVIQ FSSWMGGDRD GNPRVTPEVT
301: RDVCLLARMM AANMYFSQIE DLMFELSMWR CTDELRVRAH ELHRSSKRDA KHYIEFWKQI PPNEPYRVIL GDVRDKLYNI RERARHLLAN GTSDIPEETT
401: FTNVEQFLEP LELCYRSLCA CGDRPIADGS LLDFLRQVST FGLSLVRLDI RQESDRHTDV MDAITKHLDI GSYREWPEEK RQEWLLSELS GKRPLFGHDL
501: PKTEEITDVL ETFRVISELP SDNFGAYIIS MATSPSDVLA VELLQRECHV KQPLRVVPLF EKLADLEAAP AAVARLFSID WYRNRIDGKQ EVMIGYSDSG
601: KDAGRLSAAW ALYKAQEELV KVAKEYGVKL TMFHGRGGTV GRGGGPTHLA ILSQPPDTIH GSLRVTVQGE VIEQSFGEEH LCFRTLQRFT AATLEHGMHP
701: PVSPKPEWRA LMDEMAVIAT KEYRSVVFKE PRFVEYFRCA TPELEYGRMN IGSRPSKRKP SGGIESLRAI PWIFAWTQTR FHLPVWLGFG SAFKHVVEKD
801: PKNLQMLQDM YNQWPFFRVT LDLVEMVFAK GDPGIAALFD KLLVSEELRP FGENLRAKYE ETKSFLLQVA GHKDILEGDP YLKQRLRLRD SYITTLNVLQ
901: AYTLKRIRDP DYHVKLRPHL SKDYMESSKP AAELVKLNPK SEYAPGLEDT LILTMKGIAA GMQNTG

Best Arabidopsis Sequence Match ( AT2G42600.3 )
(BLAST)

001: MAARNLEKMA SIDAQLRLLA PGKVSEDDKL IEYDALLLDR FLDILQDLHG EDVREFVQEC YEVAADYDGN RNTEKLEELG NMLTSLDPGD SIVVTKSFSN
101: MLSLANLAEE VQIAYRRRIK KLKKGDFADE ASATTESDIE ETLKRLLQLN KTPEEVFDAL KNQTVDLVLT AHPTQSVRRS LLQKFGRIRD CLTQLYAKDI
201: TPDDKQELDE ALQREIQAAF RTDEIRRTPP TPQDEMRAGM SYFHETIWKG VPKFLRRVDT ALKNIGINER VPYNAPLIQF SSWMGGDRDG NPRVTPEVTR
301: DVCLLARMMA ANLYFSQIED LMFEMSMWRC NEELRVRAER QRCAKRDAKH YIEFWKQIPA NEPYRAILGD VRDKLYNTRE RARQLLSSGV SDVPEDAVFT
401: SVDQFLEPLE LCYRSLCDCG DRPIADGSLL DFLRQVSTFG LALVKLDIRQ ESERHSDVLD AITTHLGIGS YKEWSEDKRQ EWLLSELSGK RPLFGPDLPK
501: TEEVADVLDT FKVISELPSD SFGAYIISMA TAPSDVLAVE LLQRECGITD PLRVVPLFEK LADLESAPAA VARLFSIEWY RNRINGKQEV MIGYSDSGKD
601: AGRLSAAWQL YKTQEELVKV AKEYGVKLTM FHGRGGTVGR GGGPTHLAIL SQPPDTIHGQ LRVTVQGEVI EQSFGEEHLC FRTLQRFTAA TLEHGMHPPV
701: SPKPEWRVLM DEMAIIATEE YRSVVFKEPR FVEYFRLATP ELEYGRMNIG SRPSKRKPSG GIESLRAIPW IFAWTQTRFH LPVWLGFGGA FKRVIQKDSK
801: NLNMLKEMYN QWPFFRVTID LVEMVFAKGD PGIAALYDRL LVSEELQPFG EQLRVNYQET RRLLLQVAGH KDILEGDPYL RQRLQLRDPY ITTLNVCQAY
901: TLKQIRDPSF HVKVRPHLSK DYMESSPAAE LVKLNPKSEY APGLEDTVIL TMKGIAAGMQ NTG

Arabidopsis Description

PPC2PPC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VV64]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.