Factsheet for PGSC0003DMT400054791

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g007290.2.1	Tomato	cytosol, plastid	98.96	98.96
PGSC0003DMT400039809	Potato	cytosol	92.43	92.33
VIT_19s0014g01390.t01	Wine grape	cytosol	90.25	90.34
PGSC0003DMT400032245	Potato	cytosol	87.76	87.76
KRH55092	Soybean	nucleus	87.97	87.69
GSMUA_Achr4P08030_001	Banana	cytosol	85.06	87.61
KRH26228	Soybean	nucleus	87.76	87.49
Bra030945.1-P	Field mustard	cytosol	87.45	87.45
CDY02513	Canola	cytosol	87.45	87.45
GSMUA_Achr6P26850_001	Banana	cytosol	85.17	87.34
AT3G14940.1	Thale cress	cytosol	87.55	87.19
AT1G53310.3	Thale cress	cytosol	87.24	86.97
CDY25721	Canola	cytosol	80.29	86.87
CDX98516	Canola	cytosol	84.02	86.82
Bra027293.1-P	Field mustard	cytosol	87.03	86.76
Bra001575.1-P	Field mustard	cytosol	87.03	86.76
CDX75798	Canola	cytosol	63.9	86.52
CDX82457	Canola	cytosol	69.4	86.43
CDX97618	Canola	cytosol	69.4	86.21
PGSC0003DMT400052608	Potato	cytosol	85.58	86.21
KRH27345	Soybean	endoplasmic reticulum	86.41	86.14
CDY45929	Canola	cytosol	74.69	85.92
EES13699	Sorghum	cytosol	85.89	85.89
KRH21974	Soybean	cytosol	86.0	85.73
Os08t0366000-01	Rice	cytosol, plasma membrane	85.58	85.58
EER98700	Sorghum	cytosol	85.58	85.32
KXG33409	Sorghum	cytosol	84.65	84.47
Zm00001d012702_P008	Maize	cytosol	84.54	84.37
Os01t0758300-01	Rice	cytosol, plasma membrane	80.71	84.2
Zm00001d020057_P004	Maize	cytosol, extracellular	85.17	83.95
TraesCS3B01G329800.1	Wheat	cytosol, golgi	83.82	83.64
HORVU3Hr1G073020.2	Barley	cytosol	83.82	83.64
HORVU5Hr1G055350.3	Barley	cytosol	84.13	83.44
TraesCS3D01G295200.1	Wheat	cytosol	83.51	83.33
TraesCS5A01G181800.1	Wheat	cytosol, golgi	84.02	83.33
TraesCS5B01G179800.1	Wheat	cytosol, extracellular, golgi, unclear	84.02	83.33
TraesCS5D01G186200.1	Wheat	cytosol	83.92	83.23
TraesCS3A01G306700.1	Wheat	cytosol	83.4	83.23
GSMUA_Achr6P14490_001	Banana	cytosol	81.02	83.17
GSMUA_Achr10P...	Banana	cytosol	80.6	82.75
GSMUA_Achr9P06420_001	Banana	cytosol	80.71	80.29
PGSC0003DMT400019322	Potato	cytosol	34.13	31.33

Protein Annotations

KEGG:00620+4.1.1.31	KEGG:00680+4.1.1.31	KEGG:00710+4.1.1.31	KEGG:00720+4.1.1.31	Gene3D:1.20.1440.90	MapMan:1.4.1.1
EntrezGene:102585000	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150
GO:GO:0008152	GO:GO:0008964	GO:GO:0009987	GO:GO:0015977	UniProt:M1BWV7	HAMAP:MF_00595
InterPro:PEPCASE_His_AS	InterPro:PEP_COase	InterPro:PEP_COase_Lys_AS	InterPro:PEP_COase_bac/pln-type	PFAM:PF00311	EnsemblPlantsGene:PGSC0003DMG400021264
PGSC:PGSC0003DMG400021264	EnsemblPlants:PGSC0003DMT400054791	PRINTS:PR00150	ScanProsite:PS00393	ScanProsite:PS00781	PANTHER:PTHR30523
PANTHER:PTHR30523:SF11	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	SUPFAM:SSF51621	UniParc:UPI000295F01B	RefSeq:XP_006360045.1	RefSeq:XP_006360046.1
RefSeq:XP_015170132.1	SEG:seg	:	:	:	:

Description

Phosphoenolpyruvate carboxylase [Source:PGSC_GENE;Acc:PGSC0003DMG400021264]

Coordinates

chr10:-:2351010..2359210

Molecular Weight (calculated)

110288.0 Da

IEP (calculated)

5.618

GRAVY (calculated)

-0.401

Length

964 amino acids

Sequence
(BLAST)

001: MTTRNLEKLA SIDAQLRALV PGKVSEDDKL VEYDALLLDS FLDILQDLHG EDLKETVQEC YELSAEYEGK HDPKKLEELG NVLTSLDPGD SIVIAKAFSH
101: MLNLANLAEE VQIAYRRRQK LKKGDFADEN NATTESDIEE TFKKLVEELK KSPQEVFDAL KNQTVDLVLT AHPTQSVRRS LLQKHGRIRD CLAQLYAKDI
201: TPDDKQELDE ALQREIQAAF RTDEIRRTAP TPQDEMRAGM SYFHETIWKG VPQFLRRVDT ALKNIGINER LPYNAPLIQF SSWMGGDRDG NPRVTPEVTR
301: DVCLLARMMA ANLYYSQIEE LMFELSMWRC NDEVRIRADE LYRSSRQDTK HYIEFWKTIP PSEPYRVILG DVRDKLYQTR ERTRQVLAHG ISDIPEDATY
401: NSIEQFLEPL ELCYKSLCDC GDRPIADGSL LDFLRQVSTF GLSFVRLDIR QESDRHTDVL DAITQHLEIG SYREWSEERR QEWLLSELGG KRPLFGPDLP
501: KTEEIADVLD TLHVIAELPS DCFGAYIISM ATAPSDVLAV ELLQRECHVK QPLRVVPLFE KLDDLEAAPA AVARLFSIEW YRNRIKGKQE VMIGYSDSGK
601: DAGRFSAAWQ LYKAQEELVK VAKEHGVKLI MFHGRGGTVG RGGGPTHLAI LSQPPDTING SLRVTVQGEV IEQSFGEEHL CFRTLQRFTA ATLEHGMHPP
701: VSPKPEWRAL MDEIAVIATE KYRSIVFKEP RFVEYFRLAT PELEYGRMNI GSRPSKRKPS GGIESLRAIP WIFAWTQTRF HLPVWLGFGA AFRYAVDKDI
801: KNLRMFHEMY NAWPFFRVTI DLVEMVFAKG DPGIAALYDK LLVSEDLWSF GELLRSKYEE TRTLLLQIAG HKDLLEGDPY LKQRLRLRDS YITTLNVLQA
901: YTLKRIRDPN YHVKLRPHIS KEYMESKSAA ELVTLNPTSE YAPGLEDTLI LTMKGIAAGM QNTG

Best Arabidopsis Sequence Match ( AT3G14940.2 )
(BLAST)

001: MAGRNIEKMA SIDAQLRQLV PAKVSEDDKL VEYDALLLDR FLDILQDLHG EDLRETVQEL YELSAEYEGK REPSKLEELG SVLTSLDPGD SIVISKAFSH
101: MLNLANLAEE VQIAHRRRIK KLKKGDFVDE SSATTESDIE ETFKRLVSDL GKSPEEIFDA LKNQTVDLVL TAHPTQSVRR SLLQKHGRIR DCLAQLYAKD
201: ITPDDKQELD ESLQREIQAA FRTDEIRRTP PTPQDEMRAG MSYFHETIWK GVPKFLRRVD TALKNIGIDE RVPYNAPLIQ FSSWMGGDRD GNPRVTPEVT
301: RDVCLLARMM AANLYYNQIE NLMFELSMWR CTDEFRVRAD ELHRNSRKDA AKHYIEFWKT IPPTEPYRVI LGDVRDKLYH TRERSRQLLS NGISDIPEEA
401: TFTNVEQFLE PLELCYRSLC SCGDSPIADG SLLDFLRQVS TFGLSLVRLD IRQESERHTD VLDAITKHLD IGSSYRDWSE EGRQEWLLAE LSGKRPLFGP
501: DLPKTEEISD VLDTFKVISE LPSDCFGAYI ISMATSPSDV LAVELLQREC HVKNPLRVVP LFEKLADLEA APAAVARLFS IDWYKNRING KQEVMIGYSD
601: SGKDAGRLSA AWELYKAQEE LVKVAKKYGV KLTMFHGRGG TVGRGGGPTH LAILSQPPDT VNGSLRVTVQ GEVIEQSFGE AHLCFRTLQR FTAATLEHGM
701: NPPISPKPEW RALLDEMAVV ATEEYRSVVF QEPRFVEYFR LATPELEYGR MNIGSRPSKR KPSGGIESLR AIPWIFAWTQ TRFHLPVWLG FGAAFRYAIK
801: KDVRNLHMLQ DMYKQWPFFR VTIDLIEMVF AKGDPGIAAL YDKLLVSEDL WAFGEKLRAN FDETKNLVLQ TAGHKDLLEG DPYLKQRLRL RDSYITTLNV
901: CQAYTLKRIR DANYNVTLRP HISKEIMQSS KSAQELVKLN PTSEYAPGLE DTLILTMKGI AAGLQNTG

Arabidopsis Description

PPC3Phosphoenolpyruvate carboxylase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q84VW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.