CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24840
KRH29844

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19920.1	KRH10294	AT3G46090.1	17259181
AT1G19920.1	KRH23029	AT3G46090.1	17259181
AT1G19920.1	KRH24840	AT3G46090.1	17259181
AT1G19920.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0111200-01	Rice	cytosol, plastid	41.39	89.78
Bra016487.1-P	Field mustard	plastid	71.31	80.74
TraesCS2B01G046500.1	Wheat	cytosol, peroxisome, plastid	68.24	79.29
TraesCS2A01G032500.1	Wheat	cytosol, peroxisome, plastid	68.24	79.29
HORVU2Hr1G004890.5	Barley	cytosol	31.15	78.35
VIT_18s0001g14010.t01	Wine grape	plastid	75.61	76.4
KRG93746	Soybean	plastid	85.86	75.91
AT1G19920.1	Thale cress	plastid	72.75	74.58
Bra025782.1-P	Field mustard	plastid	72.75	73.5
CDY29382	Canola	plastid	72.54	73.29
CDX83735	Canola	plastid	72.54	73.29
CDY70746	Canola	plastid	71.31	72.05
OQU81103	Sorghum	plastid	68.44	70.46
TraesCS2D01G031800.1	Wheat	plastid	68.65	70.23
Zm00001d004513_P001	Maize	plastid	67.62	69.47
KRH35429	Soybean	plastid	65.16	68.39
KRG91385	Soybean	plastid	64.14	67.17
GSMUA_Achr4P18350_001	Banana	plastid	69.47	66.21
Os04t0111225-00	Rice	plastid	15.16	37.37

Protein Annotations

KEGG:00230+2.7.7.4	KEGG:00261+2.7.7.4	KEGG:00450+2.7.7.4	KEGG:00920+2.7.7.4	EntrezGene:100805275	MapMan:25.2.1.1
Gene3D:3.10.400.10	Gene3D:3.40.50.620	EMBL:ACUP02008057	InterPro:ATP-Sase_PUA-like_dom	EnsemblPlantsGene:GLYMA_13G051000	GO:GO:0000103
GO:GO:0003674	GO:GO:0003824	GO:GO:0004020	GO:GO:0004781	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	UniProt:I1LWX5	InterPro:IPR014729
EnsemblPlants:KRH18317	ProteinID:KRH18317	ProteinID:KRH18317.1	PFAM:PF01747	PFAM:PF14306	PANTHER:PTHR11055
PANTHER:PTHR11055:SF18	InterPro:PUA-like_sf	MetaCyc:PWY-5278	MetaCyc:PWY-5340	MetaCyc:PWY-6683	MetaCyc:PWY-6932
InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52374	SUPFAM:SSF88697	InterPro:Sulfurylase_cat_dom	InterPro:Sulphate_adenylyltransferase	TIGRFAMs:TIGR00339
UniParc:UPI0001D83D4A	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:14742455..14747878

Molecular Weight (calculated)

54240.5 Da

IEP (calculated)

7.453

GRAVY (calculated)

-0.280

Length

488 amino acids

Sequence
(BLAST)

001: MSLSLAIKLH LASSSPSFSL LTLNNHQHAN KLTTSETCSN TKVRPKPIYS TNPLIIPTCK VRPRVQYCGT MIKSSLIEPD GGALVDLVVP EGERGAKITL
101: AESLPKVQLT RIDLEWVHVV GEGWASPLKG FMREDEYLQS LHFNSLRVKD GSVVNMSLPI VLAIDDETKE RIGSSSHVGL LGPDGDCVAI LRSIEIYKHN
201: KEERIARTWG TTAPGLPYVE EVITPAGNWL IGGDLEVLKP IKYNDGLDNY RLSPKQLREE FDKRQADAVF AFQLRNPVHN GHALLMNDTR KRLLEMGYKN
301: PILLLHPLGG FVKADDVPLD VRMEQHSKVL EDGVLDPETT IVAIFPSPMH YAGPTEVQWH AKARINAGAN FYIVGRDPAG MGHPTEKRDL YDPDHGKKVL
401: SMAPGLEKLN ILPFRVAAYD TKVNKMAFFD PTRAKDFLFI SGTKMRAFAK SGENPPEGFM CPSGWKVLVK YYESLQAEEP SQQPVLST

Best Arabidopsis Sequence Match ( AT1G19920.1 )
(BLAST)

001: MSLMIRSSYV SHITLFQPRN SKPSSFTNQI SFLSSSNNNP FLNLVYKRNL TMQSVSKMTV KSSLIDPDGG ELVELIVPET EIGVKKAESE TMPKVKLNQI
101: DLEWVHVISE GWASPLKGFM REDEYLQSLH FNSLRLKNGT FVNMSLPIVL AIDDDTKEQI GSSENVALVC PQGDIIGSLR SVEIYKHNKE ERIARTWGTT
201: SPGLPYVEEY ITPSGNWLIG GDLEVFEPIK YNDGLDHYRL SPKQLREEFD NRQADAVFAF QLRNPVHNGH ALLMNDTRKR LLEMGYKNPV LLLHPLGGFT
301: KADDVPLDVR MEQHSKVLED GVLDPKTTIV SIFPSPMHYA GPTEVQWHAK ARINAGANFY IVGRDPAGMG HPTEKRDLYD PDHGKRVLSM APGLEKLNIL
401: PFRVAAYDTI EKKMAFFDPS RAKEFLFISG TKMRTYARTG ENPPDGFMCP SGWNVLVKYY ESLQESEAKQ QAVVSA

Arabidopsis Description

APS2ATP sulfurylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q43870]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.