CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 1
plasma membrane 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47052	Soybean	cytosol, endoplasmic reticulum	93.54	93.0
KRH09848	Soybean	endoplasmic reticulum, nucleus	82.63	81.58
KRH23474	Soybean	endoplasmic reticulum	82.16	81.11
VIT_09s0002g04680.t01	Wine grape	cytosol	78.87	79.25
Solyc12g043120.1.1	Tomato	extracellular	75.94	76.48
AT1G79930.1	Thale cress	cytosol	73.94	75.81
Bra039679.1-P	Field mustard	cytosol	72.65	75.67
PGSC0003DMT400080588	Potato	cytosol	75.23	75.5
Solyc12g043110.1.1	Tomato	plastid	75.47	75.47
CDX76065	Canola	cytosol	71.6	74.94
Bra014713.1-P	Field mustard	cytosol	71.36	74.69
PGSC0003DMT400080580	Potato	cytosol	75.59	74.02
GSMUA_Achr7P09800_001	Banana	cytosol	72.89	72.89
AT1G79920.2	Thale cress	cytosol	62.56	72.42
GSMUA_Achr5P06230_001	Banana	cytosol	72.07	72.15
CDY24089	Canola	endoplasmic reticulum, extracellular	72.65	72.14
GSMUA_Achr2P19660_001	Banana	cytosol	71.01	71.26
GSMUA_Achr2P15830_001	Banana	cytosol	70.42	70.84
EES17815	Sorghum	cytosol	69.84	70.67
Os01t0180800-01	Rice	plasma membrane	70.07	70.65
Zm00001d025053_P001	Maize	cytosol	19.72	70.29
EES19148	Sorghum	cytosol	70.19	70.27
HORVU1Hr1G027420.5	Barley	cytosol	68.54	70.11
TraesCS1B01G139500.1	Wheat	cytosol	68.43	70.07
TraesCS1A01G120100.4	Wheat	cytosol	68.54	69.94
Zm00001d048458_P006	Maize	cytosol	19.6	69.87
TraesCS1B01G139600.1	Wheat	cytosol, golgi	69.01	69.83
TraesCS1D01G121000.1	Wheat	cytosol	68.43	69.82
Zm00001d009948_P004	Maize	cytosol	68.08	69.63
TraesCS1D01G121200.3	Wheat	cytosol, golgi, unclear	68.78	69.6
Zm00001d037700_P002	Maize	cytosol	68.66	69.56
TraesCS1A01G120200.1	Wheat	cytosol	68.66	69.56
HORVU1Hr1G026840.3	Barley	cytosol	67.96	69.34
CDY43337	Canola	cytosol	71.48	68.5
Zm00001d037717_P002	Maize	plastid	67.72	68.45
Zm00001d009950_P002	Maize	cytosol	68.19	67.64
Os05t0181000-01	Rice	plasma membrane	65.26	65.18
CDY45119	Canola	extracellular	72.54	64.64
CDY32364	Canola	cytosol	19.72	57.93
CDY32367	Canola	cytosol, mitochondrion, plastid	19.72	57.34
CDY67465	Canola	cytosol	18.08	55.2
KRG98799	Soybean	cytosol	46.48	51.7
KRH46160	Soybean	cytosol	46.01	50.98
KRH14415	Soybean	cytosol	46.13	50.84
KRH21161	Soybean	cytosol	2.82	35.29
TraesCS3B01G298400.1	Wheat	cytosol	23.12	31.32
KRH70478	Soybean	cytosol	10.33	31.32
KRH21041	Soybean	cytosol	10.68	30.85
KRH01639	Soybean	cytosol	21.71	28.59
KRH30699	Soybean	cytosol	10.33	26.83
KRH17619	Soybean	endoplasmic reticulum	25.59	24.47
KRG90078	Soybean	endoplasmic reticulum	25.12	23.96
KRG98077	Soybean	cytosol	12.79	23.34
KRH51336	Soybean	cytosol	14.91	23.05
KRH77864	Soybean	cytosol	13.97	20.84
KRH11209	Soybean	cytosol	7.04	18.58

Protein Annotations

Gene3D:1.20.1270.10	EntrezGene:100816539	MapMan:19.1.1.2.1.1	MapMan:19.1.5.3	Gene3D:3.30.30.30	Gene3D:3.30.420.40
Gene3D:3.90.640.10	EMBL:ACUP02004927	EnsemblPlantsGene:GLYMA_08G206900	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Hsp_70_fam	UniProt:I1KV87	InterPro:IPR007110
InterPro:IPR029047	InterPro:IPR029048	InterPro:Ig-like_dom	EnsemblPlants:KRH44373	ProteinID:KRH44373	ProteinID:KRH44373.1
PFAM:PF00012	PRINTS:PR00301	PFscan:PS50835	PANTHER:PTHR19375	PANTHER:PTHR19375:SF322	SUPFAM:SSF100920
SUPFAM:SSF100934	SUPFAM:SSF53067	UniParc:UPI0002338E01	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:16712712..16718051

Molecular Weight (calculated)

94043.6 Da

IEP (calculated)

4.963

GRAVY (calculated)

-0.449

Length

852 amino acids

Sequence
(BLAST)

001: MSVVGFDFGN ESCIVAVARQ RGIDVVLNDE SKRETPAIVC FGDKQRFIGT AGAASTMMNP KNSISQFKRL IGRKFSDPEL QRDLKSLPFL VTEGSDGYPL
101: IHARYMGESK TFTPTQVFGM MLSNLKEIAE KNLTTAVVDC CIGIPVYFTD LQRRAVLDAA TIAGLHPLRL IQEMTATALA YGIYKTDLPE NDQLNVAFVD
201: VGHASMQVCI AGFKKGQLKV LAHSYDRSLG GRDFDEVLFH HFAGKFKEEY KIDVFQNARA CIRLRTACEK IKKMLSANPV APLNIECLMD EKDVRGFIKR
301: DEFEQLSLPI LERVKGPLEK ALAEAGLTVE NVHTVEVVGS GSRVPAINKI LTEFFKKEPR RTMNASECVA RGCALECAIL SPTFKVREFQ VNESLPFSIS
401: LSWKGSGPDA QDNGSENQQS SLVFPKGNPI PSIKALTFCR AGTFSVDVLY DDASGLQTPA KISTYTIGPF QTTNGERAKV KVKVRLNLHG IVSLESATLL
501: EEEKVGVPVT KEAAGENTKM DIDEVPAEAA APPASNDTGA NMEGAKASTD ASGVENGIPE GGDKPLQKDT DTKVQAPKKK VKKTNIPVAE LVYGAMVPVD
601: VQKALEKEFE MALQDRVMEE TKDKKNAVEA YVYDMRNKLN DEYQEFVTAS ERDDFTAKLQ EVEDWLYDEG EDETKGVYIA KLEELKKQGD PIDGRYEEFT
701: ERGTIIEQFV YCINSYRQVA MSNDPRFEHI DINEKQKVIN KCVEAEKWFN EKQQQQSSLP KYANPVLLSA EMRKKAEDVD RFCKPIMTTQ KPTKAVTPAG
801: PATPSSQSDE QQQPQGDSDV NSNENAGNSS SQAAPASTEP METEKSENTG SA

Best Arabidopsis Sequence Match ( AT1G79930.1 )
(BLAST)

001: MSVVGFDFGN ENCLVAVARQ RGIDVVLNDE SNRETPAIVC FGDKQRFIGT AGAASTMMNP KNSISQIKRL IGRQFSDPEL QRDIKSLPFS VTEGPDGYPL
101: IHANYLGEKR AFTPTQVMGM MLSNLKGIAE KNLNTAVVDC CIGIPVYFTD LQRRAVLDAA TIAGLHPLRL IHETTATALA YGIYKTDLPE SDQLNVAFID
201: IGHASMQVCI AGFKKGQLKI LSHAFDRSLG GRDFDEVLFN HFAAKFKDEY KIDVSQNAKA SLRLRATCEK LKKVLSANPL APLNIECLMD EKDVRGVIKR
301: EEFEEISIPI LERVKRPLEK ALSDAGLTVE DVHMVEVIGS GSRVPAMIKI LTEFFGKEPR RTMNASECVS RGCALQCAIL SPTFKVREFQ VHESFPFSIS
401: LAWKGAASEA QNGGAENQQS TIVFPKGNPI PSVKALTFYR SGTFSVDVQY SDVNDLQAPP KISTYTIGPF QSSKGERAKL KVKVRLNLHG IVSVESATLL
501: EEEEVEVPVT KEHSEETTKM DSDKASAEAA PASGDCDVNM QDAKDTSDAT GTDNGVPESA EKPVQMETDS KAEAPKKKVK KTNVPLSELV YGALKTVEVE
601: KAVEKEFEMA LQDRVMEETK DRKNAVESYV YDMRNKLSDK YQEYITDSER EAFLANLQEV EDWLYEDGED ETKGVYVAKL EELKKVGDPV EVRYKESLER
701: GSVIDQLGYC INSYREAAMS TDPKFDHIEL AEKQKVLNEC VEAEAWLRGK QQQQDTLPKY ATPALLSADV KSKAEALDKF CRPIMTKPKP VAKAEAPQAK
801: GGEQADEGKS EPEQPASAEP METENPAEGS T

Arabidopsis Description

HSP70-14Heat shock 70 kDa protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7C0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.