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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 1
  • plastid 1
  • extracellular 4
  • endoplasmic reticulum 6
  • vacuole 4
  • plasma membrane 5
  • golgi 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
ChloroP:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:mitochondrion
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:endoplasmic reticulum
 nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG90078 Soybean endoplasmic reticulum 94.72 94.51
KRH51336 Soybean cytosol 51.63 83.48
HORVU2Hr1G036440.8 Barley cytosol 9.32 80.58
HORVU6Hr1G001950.1 Barley cytosol 16.5 73.13
VIT_04s0008g04410.t01 Wine grape endoplasmic reticulum 71.72 71.4
HORVU1Hr1G040940.1 Barley cytosol 9.65 69.35
VIT_09s0096g00090.t01 Wine grape endoplasmic reticulum, plastid 72.05 68.74
CDX90500 Canola endoplasmic reticulum 66.22 67.89
CDY60712 Canola endoplasmic reticulum 66.22 67.89
Bra012696.1-P Field mustard endoplasmic reticulum 66.11 67.78
PGSC0003DMT400041135 Potato extracellular 67.34 67.42
AT4G16660.2 Thale cress endoplasmic reticulum, mitochondrion 67.12 67.12
CDY32270 Canola cytosol, mitochondrion, plastid 59.03 66.75
Solyc07g043560.2.1 Tomato plastid 66.55 66.63
CDY40516 Canola cytosol 61.73 65.87
Bra038496.1-P Field mustard endoplasmic reticulum 62.18 65.48
HORVU1Hr1G077070.2 Barley cytosol 17.51 64.73
GSMUA_Achr10P... Banana endoplasmic reticulum 64.76 64.4
GSMUA_Achr6P09420_001 Banana endoplasmic reticulum 64.2 64.05
TraesCS6B01G304200.1 Wheat golgi 62.51 62.87
TraesCS6D01G257000.1 Wheat endoplasmic reticulum 61.95 62.66
TraesCS6A01G276700.1 Wheat endoplasmic reticulum, unclear 62.07 62.42
Zm00001d051607_P004 Maize endoplasmic reticulum 62.4 61.85
VIT_04s0043g00710.t01 Wine grape cytosol 50.62 60.95
TraesCS1B01G206700.1 Wheat cytosol 16.61 59.68
Zm00001d017809_P002 Maize plasma membrane 60.38 58.04
KXG30896 Sorghum endoplasmic reticulum 59.71 57.33
Zm00001d051609_P004 Maize cytosol 28.96 55.25
KRH21161 Soybean cytosol 2.13 27.94
KRH70478 Soybean cytosol 8.75 27.76
KRH14415 Soybean cytosol 23.68 27.3
KRG98799 Soybean cytosol 23.01 26.76
KRH46160 Soybean cytosol 22.45 26.01
KRH01639 Soybean cytosol 18.86 25.97
KRH44373 Soybean cytosol, endoplasmic reticulum, nucleus 24.47 25.59
KRH09848 Soybean endoplasmic reticulum, nucleus 24.58 25.38
KRH23474 Soybean endoplasmic reticulum 24.47 25.26
KRH47052 Soybean cytosol, endoplasmic reticulum 24.24 25.2
KRG98077 Soybean cytosol 12.01 22.91
KRH30699 Soybean cytosol 8.31 22.56
KRH21041 Soybean cytosol 7.41 22.37
KRH11209 Soybean cytosol 7.41 20.43
KRH77864 Soybean cytosol 11.9 18.56
Protein Annotations
Gene3D:1.20.1270.10EntrezGene:100786898MapMan:19.1.1.2.5Gene3D:2.60.34.10Gene3D:3.30.30.30Gene3D:3.30.420.40
Gene3D:3.90.640.10EMBL:ACUP02007821ncoils:CoilEnsemblPlantsGene:GLYMA_13G003700GO:GO:0000166GO:GO:0003674
GO:GO:0005488GO:GO:0005524InterPro:HSP70_C_sfInterPro:HSP70_peptide-bd_sfInterPro:Heat_shock_70_CSInterPro:Hsp_70_fam
UniProt:I1LXK6InterPro:IPR029047InterPro:IPR029048EnsemblPlants:KRH17619ProteinID:KRH17619ProteinID:KRH17619.1
PFAM:PF00012PRINTS:PR00301ScanProsite:PS01036PANTHER:PTHR19375PANTHER:PTHR19375:SF320SUPFAM:SSF100934
SUPFAM:SSF53067SignalP:SignalP-noTMUniParc:UPI000233B669SEG:seg::
Description
hypothetical protein
Coordinates
chr13:+:1044713..1053495
Molecular Weight (calculated)
99043.8 Da
IEP (calculated)
5.118
GRAVY (calculated)
-0.481
Length
891 amino acids
Sequence
(BLAST)
001: MASKVALMAL FSVALLFSPS QSAVFSVDLG SESVKVAVVN LKPGQSPISV AINEMSKRKS PALVSFHDGD RLLGEEAAGL AARYPQKVYS QMRDLIAKPY
101: ASAQRILDSM YLPFDAKEDS RGGVSFQSEN DDAVYSPEEL VAMVLGYTVN LAEFHAKIQI KDAVIAVPPY MGQAERRGLL AAAQLAGINV LSLINEHSGA
201: ALQYGIDKDF SNESRHVIFY DMGASSTHAA LVYFSAYKGK EYGKSVSVNQ FQVKDVRWDP ELGGQHMELR LVEYFADQFN AQVGGGIDVR KFPKAMAKLK
301: KQVKRTKEIL SANTAAPISV ESLHDDVDFR STITREKFEE LCEDIWEKSL LPVKEVLENS GLSLEQIYAV ELIGGATRVP KLQAKLQEFL RRKELDRHLD
401: ADEAIVLGAA LHAANLSDGI KLNRKLGMID GSLYGFVVEL NGPDLLKDES SRQLLVPRMK KVPSKMFRSI NHNKDFEVSL AYESENHLPP GVTSPEIARY
501: QISGLTDASE KYSSRNLSSP IKTNIHFSLS RSGILSLDRA DAVIEITEWV EVPRKNLTIE NSTVSSNVSA ESAAGNSSEE NNESVQTDSG INKTSNISSE
601: EQAAAEPATE KKLKKRTFRV PLKIVEKITG FGMSLSQDFL AEAKRKLQVL DKKDADRKRT AELKNNLEGY IYTTKEKIET LEEFEKVSTS EERQSFIEKL
701: DQVQDWLYTD GEDANATEFQ ERLDQLKAVG DPIFFRLKEL TARPAAVEHA NKYIDELKQI VEEWKAKKSW LPQERVDEVI KSSEKLKNWL DEKEAEQTKT
801: SGFSKPAFTS EEVYLKVLDL QTKVASINRI PKPKPKVQKP VKNETESSEQ NTENSDSNSA DSSSSSDSSV NSSEGTSEET VTEQTEGHDE L
Best Arabidopsis Sequence Match ( AT4G16660.1 )
(BLAST)
001: MGKIFSWLVV LLSLISLVPV PSESAVLSVD LGSEWVKVAV VNLKRGQSPI SVAINEMSKR KSPALVAFQS GDRLLGEEAA GITARYPNKV YSQLRDMVGK
101: PFKHVKDFID SVYLPFDIVE DSRGAVGIKI DDGSTVYSVE ELLAMILGYA SNLAEFHAKI PVKDMVVSVP PYFGQAERRG LIQASQLAGV NVLSLVNEHS
201: GAALQYGIDK DFANGSRHVI FYDMGSSSTY AALVYYSAYS EKEYGKTVSV NQFQVKDVRW DLGLGGQSME MRLVEHFADE FNKQLGNGVD VRKFPKAMAK
301: LKKQVKRTKE ILSANTAAPI SVESLHDDRD FRSTITREKF EELCKDLWER SLTPLKDVLK HSGLKIDDIS AVELIGGATR VPKLQSTIQE FIGKQQLDKH
401: LDADEAIVLG SALHAANLSD GIKLKRRLGI VDGSPYGFLV ELEGPNVKKD ESTKQQLVPR MKKLPSKMFR SFVLDKDFDV SLAYESEGIL PPGTTSPVFA
501: QYSVSGLADA SEKYSSRNLS APIKANLHFS LSRSGILSLD RGDAVIEITE WVDVPKKNVT IDSNTTTSTG NATDENSQEN KEDLQTDAEN STASNTTAEE
601: PAVASLGTEK KLKKRTFRIP LKVVEKTVGP GAPFSKESLA EAKIKLEALD KKDRERRRTA ELKNNLESYI YATKEKLETP EFEKISTQEE RKAFVEKLDE
701: VQDWLYMDGE DANATEFEKR LDSLKAIGSP ISFRSEELTA RPVAIEYARK YLTELKEIIK EWETNKTWLP KEKIDEVSKE AEKVKSWLDK NVAEQEKTSL
801: WSKPVFTSTE VYAKVFTLQD KVTKVNKIPK PKPKIEKVTK TENTTKEEEQ SKSSDEAAKE EESHDEL
Arabidopsis Description
heat shock protein 70 (Hsp 70) family protein [Source:TAIR;Acc:AT4G16660]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.