CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 18757068
nucleus: 21132161
extracellular: 25724908
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 18757068 doi

NW Oehrle, AD Sarma, JK Waters, DW Emerich

United States Department of Agriculture, Curtis Hall, University of Missouri, Columbia, MO 65211, United States.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02235	Canola	cytosol	25.81	90.27
KRH70478	Soybean	cytosol	38.95	89.68
CDY10445	Canola	cytosol	33.08	89.17
CDY15421	Canola	cytosol	33.08	89.17
CDY40361	Canola	cytosol	33.08	89.17
CDY16796	Canola	cytosol	32.61	88.66
CDY53148	Canola	cytosol	34.78	87.89
CDX85038	Canola	cytosol	35.7	87.83
CDY16175	Canola	cytosol	34.78	87.55
GSMUA_Achr2P16250_001	Banana	cytosol	33.08	87.35
CDY36723	Canola	cytosol	25.97	86.15
CDY31804	Canola	cytosol	54.56	84.65
Zm00001d007706_P001	Maize	cytosol	39.72	75.81
CDY04444	Canola	mitochondrion	20.87	75.42
CDX89754	Canola	plastid	25.81	74.55
TraesCS6A01G342400.1	Wheat	cytosol	51.31	67.62
Os12t0569700-03	Rice	endoplasmic reticulum, mitochondrion	21.33	66.03
OQU92817	Sorghum	cytosol	29.98	64.88
HORVU6Hr1G082550.1	Barley	cytosol	39.1	64.38
KRH21041	Soybean	cytosol	29.21	64.07
KRH21161	Soybean	cytosol	6.65	63.24
KRG98077	Soybean	cytosol	44.67	61.88
KRH30699	Soybean	cytosol	30.14	59.45
KRH11209	Soybean	cytosol	29.21	58.51
KRH77864	Soybean	cytosol	31.07	35.2
KRH14415	Soybean	cytosol	27.98	23.42
KRG98799	Soybean	cytosol	26.43	22.32
KRH46160	Soybean	cytosol	25.97	21.85
KRH44373	Soybean	cytosol, endoplasmic reticulum, nucleus	28.59	21.71
KRH23474	Soybean	endoplasmic reticulum	28.13	21.09
KRH09848	Soybean	endoplasmic reticulum, nucleus	28.13	21.09
KRH47052	Soybean	cytosol, endoplasmic reticulum	27.82	21.0
KRH51336	Soybean	cytosol	16.23	19.06
KRH17619	Soybean	endoplasmic reticulum	25.97	18.86
KRG90078	Soybean	endoplasmic reticulum	25.66	18.59

Protein Annotations

Gene3D:1.20.1270.10	EntrezGene:100789485	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40
Gene3D:3.90.640.10	EMBL:ACUP02011523	ncoils:Coil	EnsemblPlantsGene:GLYMA_18G289600	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam
InterPro:IPR029047	InterPro:IPR029048	UniProt:K7MVD3	EnsemblPlants:KRH01639	ProteinID:KRH01639	ProteinID:KRH01639.1
PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375
PANTHER:PTHR19375:SF308	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	UniParc:UPI000233F292	SEG:seg

Description

hypothetical protein

Coordinates

chr18:-:56905117..56908394

Molecular Weight (calculated)

70843.1 Da

IEP (calculated)

4.834

GRAVY (calculated)

-0.427

Length

647 amino acids

Sequence
(BLAST)

001: MAGKGEGLAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDT ERLIGDAAKN QVAMNPINTV FDAKRLIGRR VSDPSVQSDM KLWPFKVTAG
101: AGEKPMIGVN YKGEEKQFAA EEISSMVLTK MREIAEAYLG STVKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TSCERAKRTL SSTAQTTIEI DSLFEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKDLCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERTRTRDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKSEDEEHKK KVEGKNALEN YAYNMRNTIK DEKISSKLSS EDKTKIDNAI EQAIQWLDTN QLAEADEFED
601: KMKELEGICN PIIAKMYQGG AGTGGDVDDD APPAGGSGAG PKIEEVD

Best Arabidopsis Sequence Match ( AT5G02500.1 )
(BLAST)

001: MSGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPVNTV FDAKRLIGRR FSDSSVQSDM KLWPFKIQAG
101: PADKPMIYVE YKGEEKEFAA EEISSMVLIK MREIAEAYLG VTIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKSKKDIT GNPRALRRLR TSCERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQGAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTTLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTIQ DEKIGEKLPA ADKKKIEDSI EQAIQWLEGN QLAEADEFED
601: KMKELESICN PIIAKMYQGA GGEAGGPGAS GMDDDAPPAS GGAGPKIEEV D

Arabidopsis Description

MED37EProbable mediator of RNA polymerase II transcription subunit 37e [Source:UniProtKB/Swiss-Prot;Acc:P22953]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.