CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 1
plasma membrane 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23474	Soybean	endoplasmic reticulum	95.6	95.6
VIT_09s0002g04680.t01	Wine grape	cytosol	82.39	83.84
KRH47052	Soybean	cytosol, endoplasmic reticulum	82.73	83.31
KRH44373	Soybean	cytosol, endoplasmic reticulum, nucleus	81.58	82.63
PGSC0003DMT400080588	Potato	cytosol	80.76	82.1
Solyc12g043120.1.1	Tomato	extracellular	80.42	82.03
Solyc12g043110.1.1	Tomato	plastid	80.53	81.57
AT1G79930.1	Thale cress	cytosol	76.83	79.78
Bra039679.1-P	Field mustard	cytosol	75.32	79.46
PGSC0003DMT400080580	Potato	cytosol	79.95	79.31
CDX76065	Canola	cytosol	74.39	78.87
Bra014713.1-P	Field mustard	cytosol	74.16	78.62
GSMUA_Achr7P09800_001	Banana	cytosol	75.55	76.53
CDY24089	Canola	endoplasmic reticulum, extracellular	75.32	75.76
EES17815	Sorghum	cytosol	72.89	74.7
Os01t0180800-01	Rice	plasma membrane	73.12	74.67
EES19148	Sorghum	cytosol	73.58	74.62
GSMUA_Achr5P06230_001	Banana	cytosol	73.46	74.5
AT1G79920.2	Thale cress	cytosol	63.5	74.46
GSMUA_Achr2P19660_001	Banana	cytosol	73.23	74.44
GSMUA_Achr2P15830_001	Banana	cytosol	73.0	74.38
Zm00001d037700_P002	Maize	cytosol	72.42	74.32
Zm00001d009948_P004	Maize	cytosol	71.49	74.07
TraesCS1B01G139500.1	Wheat	cytosol	70.92	73.56
TraesCS1A01G120100.4	Wheat	cytosol	71.15	73.53
TraesCS1D01G121000.1	Wheat	cytosol	71.03	73.41
HORVU1Hr1G026840.3	Barley	cytosol	71.03	73.41
TraesCS1B01G139600.1	Wheat	cytosol, golgi	71.38	73.16
HORVU1Hr1G027420.5	Barley	cytosol	70.57	73.11
TraesCS1D01G121200.3	Wheat	cytosol, golgi, unclear	71.26	73.04
TraesCS1A01G120200.1	Wheat	cytosol	71.15	73.01
Zm00001d037717_P002	Maize	plastid	70.92	72.6
CDY43337	Canola	cytosol	74.16	71.99
Zm00001d009950_P002	Maize	cytosol	71.49	71.83
Zm00001d025053_P001	Maize	cytosol	19.7	71.13
Zm00001d048458_P006	Maize	cytosol	19.58	70.71
Os05t0181000-01	Rice	plasma membrane	68.48	69.28
CDY45119	Canola	extracellular	74.97	67.68
CDY32364	Canola	cytosol	20.16	60.0
CDY32367	Canola	cytosol, mitochondrion, plastid	19.93	58.7
CDY67465	Canola	cytosol	18.66	57.71
KRG98799	Soybean	cytosol	47.28	53.26
KRH46160	Soybean	cytosol	46.81	52.54
KRH14415	Soybean	cytosol	47.05	52.52
KRH21161	Soybean	cytosol	2.67	33.82
TraesCS3B01G298400.1	Wheat	cytosol	23.52	32.27
KRH70478	Soybean	cytosol	10.31	31.67
KRH21041	Soybean	cytosol	10.08	29.49
KRH01639	Soybean	cytosol	21.09	28.13
KRH30699	Soybean	cytosol	9.62	25.3
KRH17619	Soybean	endoplasmic reticulum	25.38	24.58
KRH51336	Soybean	cytosol	15.3	23.96
KRG90078	Soybean	endoplasmic reticulum	24.57	23.74
KRG98077	Soybean	cytosol	11.94	22.06
KRH77864	Soybean	cytosol	13.09	19.79
KRH11209	Soybean	cytosol	7.07	18.89

Protein Annotations

Gene3D:1.20.1270.10	EntrezGene:100778196	MapMan:19.1.1.2.1.1	MapMan:19.1.5.3	Gene3D:2.60.34.10	Gene3D:3.30.30.30
Gene3D:3.30.420.40	Gene3D:3.90.640.10	EMBL:ACUP02009112	ncoils:Coil	EnsemblPlantsGene:GLYMA_15G014400	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Hsp_70_fam
UniProt:I1MCN3	InterPro:IPR029047	InterPro:IPR029048	EnsemblPlants:KRH09848	ProteinID:KRH09848	ProteinID:KRH09848.1
PFAM:PF00012	PRINTS:PR00301	PANTHER:PTHR19375	PANTHER:PTHR19375:SF322	SUPFAM:SSF100920	SUPFAM:SSF100934
SUPFAM:SSF53067	UniParc:UPI000233BE67	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:1153141..1158462

Molecular Weight (calculated)

95725.6 Da

IEP (calculated)

4.857

GRAVY (calculated)

-0.510

Length

863 amino acids

Sequence
(BLAST)

001: MSVVGFDFGN ESCIVAVARQ RGIDVVLNDE SKRETPAIVC FGDKQRFLGT AGAASTMMNP KNSISQIKRL IGRQFSDPEL QRDLKTFPFV VTEGPDGYPL
101: IHARYLGEAR TFTPTQVFGM MLSNLKEIAE KNLNAAVVDC CIGIPLYFTD LQRRAVLDAA TIAGLHPLRL FHETTATALA YGIYKTDLPE NDQLNVAFVD
201: VGHASMQVCI AGFKKGQLKV LSQSYDRSLG GRDFDEVLFN HFAAKFKEEY KIDVFQNARA CLRLRAACEK LKKVLSANPE APLNIECLMD EKDVRGFIKR
301: DEFEQLSLPI LERVKGPLEK ALAEAGLTVE NVHMVEVVGS GSRVPAINKI LTEFFKKEPR RTMNASECVA RGCALQCAIL SPTFKVREFQ VNESFPFSIS
401: LSWKGPSSDA QESGPNNTQR TLVFPKGNPI PSVKALTIYR SGTFSIDVQY DDVSELQTPA KISTYTIGPF QSTITEKAKV KVKVRLNLHG IVSVESATLL
501: EEEEIEVPVS KEPAGENTKM ETDEAPANVA APPSTNDNDV NMQDANSKAT ADAPGSENGT PEAGDKPVQM DTDTKVEAPK KKVKKINIPV VELVYGAMAA
601: ADVQKAVEKE FEMALQDRVM EETKDKKNAV EAYVYDTRNK LNDKYQEFVV DSERESFTAK LQEVEDWLYE DGEDETKGVY IAKLEELKKQ GDPIEERYKE
701: YMERGTVIDQ LVYCINSYRE AAMSNDPKFD HIDINEKQKV LNECVEAENW LREKKQQQDS LPKYVTPVLL SADIRKKAEA VDRFCKPIMM KPKPPPPKPA
801: TPEAPATPPP QGGEQPQQQQ QQPPEENPNA STNEKAGDNA NPAPPPASAE PMETDKPENT GSA

Best Arabidopsis Sequence Match ( AT1G79930.1 )
(BLAST)

001: MSVVGFDFGN ENCLVAVARQ RGIDVVLNDE SNRETPAIVC FGDKQRFIGT AGAASTMMNP KNSISQIKRL IGRQFSDPEL QRDIKSLPFS VTEGPDGYPL
101: IHANYLGEKR AFTPTQVMGM MLSNLKGIAE KNLNTAVVDC CIGIPVYFTD LQRRAVLDAA TIAGLHPLRL IHETTATALA YGIYKTDLPE SDQLNVAFID
201: IGHASMQVCI AGFKKGQLKI LSHAFDRSLG GRDFDEVLFN HFAAKFKDEY KIDVSQNAKA SLRLRATCEK LKKVLSANPL APLNIECLMD EKDVRGVIKR
301: EEFEEISIPI LERVKRPLEK ALSDAGLTVE DVHMVEVIGS GSRVPAMIKI LTEFFGKEPR RTMNASECVS RGCALQCAIL SPTFKVREFQ VHESFPFSIS
401: LAWKGAASEA QNGGAENQQS TIVFPKGNPI PSVKALTFYR SGTFSVDVQY SDVNDLQAPP KISTYTIGPF QSSKGERAKL KVKVRLNLHG IVSVESATLL
501: EEEEVEVPVT KEHSEETTKM DSDKASAEAA PASGDCDVNM QDAKDTSDAT GTDNGVPESA EKPVQMETDS KAEAPKKKVK KTNVPLSELV YGALKTVEVE
601: KAVEKEFEMA LQDRVMEETK DRKNAVESYV YDMRNKLSDK YQEYITDSER EAFLANLQEV EDWLYEDGED ETKGVYVAKL EELKKVGDPV EVRYKESLER
701: GSVIDQLGYC INSYREAAMS TDPKFDHIEL AEKQKVLNEC VEAEAWLRGK QQQQDTLPKY ATPALLSADV KSKAEALDKF CRPIMTKPKP VAKAEAPQAK
801: GGEQADEGKS EPEQPASAEP METENPAEGS T

Arabidopsis Description

HSP70-14Heat shock 70 kDa protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7C0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.