Factsheet for Solyc12g043120.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
plasma membrane 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
extracellular: 22892874
plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080580	Potato	cytosol	97.16	94.48
Solyc12g043110.1.1	Tomato	plastid	94.21	93.54
VIT_09s0002g04680.t01	Wine grape	cytosol	81.56	81.37
KRH09848	Soybean	endoplasmic reticulum, nucleus	82.03	80.42
KRH23474	Soybean	endoplasmic reticulum	81.56	79.95
Bra039679.1-P	Field mustard	cytosol	76.83	79.46
CDX76065	Canola	cytosol	76.12	79.12
Bra014713.1-P	Field mustard	cytosol	75.89	78.87
AT1G79930.1	Thale cress	cytosol	77.19	78.58
GSMUA_Achr7P09800_001	Banana	cytosol	76.71	76.17
KRH47052	Soybean	cytosol, endoplasmic reticulum	77.07	76.08
KRH44373	Soybean	cytosol, endoplasmic reticulum, nucleus	76.48	75.94
CDY24089	Canola	endoplasmic reticulum, extracellular	76.83	75.76
GSMUA_Achr5P06230_001	Banana	cytosol	75.18	74.74
GSMUA_Achr2P15830_001	Banana	cytosol	74.7	74.62
GSMUA_Achr2P19660_001	Banana	cytosol	74.11	73.85
AT1G79920.2	Thale cress	cytosol	64.18	73.78
Os01t0180800-01	Rice	plasma membrane	73.4	73.49
EES17815	Sorghum	cytosol	72.22	72.57
CDY43337	Canola	cytosol	76.12	72.44
TraesCS1B01G139600.1	Wheat	cytosol, golgi	71.99	72.33
EES19148	Sorghum	cytosol	72.69	72.27
HORVU1Hr1G026840.3	Barley	cytosol	71.28	72.22
TraesCS1A01G120100.4	Wheat	cytosol	71.16	72.1
TraesCS1D01G121200.3	Wheat	cytosol, golgi, unclear	71.75	72.09
TraesCS1A01G120200.1	Wheat	cytosol	71.63	72.06
TraesCS1D01G121000.1	Wheat	cytosol	71.04	71.98
TraesCS1B01G139500.1	Wheat	cytosol	70.69	71.88
HORVU1Hr1G027420.5	Barley	cytosol	70.57	71.67
Zm00001d009948_P004	Maize	cytosol	70.45	71.55
Zm00001d037700_P002	Maize	cytosol	71.04	71.46
Zm00001d009950_P002	Maize	cytosol	71.04	69.97
Zm00001d037717_P002	Maize	plastid	69.5	69.75
Zm00001d025053_P001	Maize	cytosol	19.5	69.04
Zm00001d048458_P006	Maize	cytosol	19.39	68.62
Os05t0181000-01	Rice	plasma membrane	68.79	68.23
CDY45119	Canola	extracellular	76.24	67.47
CDY32364	Canola	cytosol	20.69	60.34
CDY32367	Canola	cytosol, mitochondrion, plastid	20.33	58.7
CDY67465	Canola	cytosol	18.56	56.27
Solyc02g080470.2.1	Tomato	cytosol	48.23	54.18
TraesCS3B01G298400.1	Wheat	cytosol	23.76	31.96
Solyc07g043560.2.1	Tomato	plastid	24.94	23.71
Solyc09g075950.1.1	Tomato	plastid	14.42	21.18

Protein Annotations

Gene3D:1.20.1270.10	MapMan:19.1.1.2.1.1	MapMan:19.1.5.3	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40
Gene3D:3.90.640.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:HSP70_C_sf
InterPro:HSP70_peptide-bd_sf	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	UniProt:K4DFA0	PFAM:PF00012
PRINTS:PR00301	PANTHER:PTHR19375	PANTHER:PTHR19375:SF322	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067
EnsemblPlantsGene:Solyc12g043120.1	EnsemblPlants:Solyc12g043120.1.1	UniParc:UPI00027695A1	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:+:39096307..39100382

Molecular Weight (calculated)

93001.3 Da

IEP (calculated)

4.973

GRAVY (calculated)

-0.417

Length

846 amino acids

Sequence
(BLAST)

001: MSVVGFDFGN ESGVVAVARQ RGIDVVLNDE SKRETPAIVC FGEKQRFLGT AGAASSMMNP KNTISQIKRL IGRQFSDPEL QRDLKALPFL VTEGPDGYPL
101: IHARYLGEMR TFTPTQVVGM VFSDLKTIAE KNLNAAVVDC CIGIPVYFTD LQRRAVMDAA TIAGLHPLHL IHETTATALA YGIYKTDLPE NDQLNVAFVD
201: VGHASLQVCI AGFKKGQLKI LAHSFDRNLG GRDFDEALFQ HFAAKFKEEY KIDVLQNAKA CIRLRAACEK LKKVLSANPE APLNIECLMD EKDVRGFIKR
301: DEFEQISIPI LERVKKPLEK ALAEAGLTTE NIHAVEVVGS SSRVPAIMRI LTEFFGKEPR RTMNASECVA KGAALQCAIL SPTFKVREFK VNESFPFSIA
401: LSWKGPSPDA QNGENHQSTI VFPKGNPIPS VKALTFYRSG TFTTDVQYAD VSELQASAKI STYTIGPFQS SKGERAKLKV KVRLTLHGIV SVESATLLEE
501: EEVDVPVVKE TAKGPARMET DEASADAAPS TTSESDVNME DAKGTAAASG AENGVPESGD EPVQMESDAK VEAPKKRVKK TSVPVTEIVY GAMAAADVQK
601: AVEKEFEMAL QDRVMEETKD KKNAVESYVY DMRNKLSDKY QEFVTDSERE QFMAVLQEVE DWLYEDGEDE TKGVYIAKLE ELKKQGDPIE QRYKEHTERG
701: PVIDQFIYCI NSYREAAVSS DPKFDHIDLA EKQKVLNECV EAEAWYREKK QQQDALPKYA NPVLLSADVR KKAEALDRVC RPIMTKPKPA KPATPETPSP
801: QSSQGGEQQP QGAASPNATE GDSADSGAPP AGEPMETDKS DVPSAS

Best Arabidopsis Sequence Match ( AT1G79930.1 )
(BLAST)

001: MSVVGFDFGN ENCLVAVARQ RGIDVVLNDE SNRETPAIVC FGDKQRFIGT AGAASTMMNP KNSISQIKRL IGRQFSDPEL QRDIKSLPFS VTEGPDGYPL
101: IHANYLGEKR AFTPTQVMGM MLSNLKGIAE KNLNTAVVDC CIGIPVYFTD LQRRAVLDAA TIAGLHPLRL IHETTATALA YGIYKTDLPE SDQLNVAFID
201: IGHASMQVCI AGFKKGQLKI LSHAFDRSLG GRDFDEVLFN HFAAKFKDEY KIDVSQNAKA SLRLRATCEK LKKVLSANPL APLNIECLMD EKDVRGVIKR
301: EEFEEISIPI LERVKRPLEK ALSDAGLTVE DVHMVEVIGS GSRVPAMIKI LTEFFGKEPR RTMNASECVS RGCALQCAIL SPTFKVREFQ VHESFPFSIS
401: LAWKGAASEA QNGGAENQQS TIVFPKGNPI PSVKALTFYR SGTFSVDVQY SDVNDLQAPP KISTYTIGPF QSSKGERAKL KVKVRLNLHG IVSVESATLL
501: EEEEVEVPVT KEHSEETTKM DSDKASAEAA PASGDCDVNM QDAKDTSDAT GTDNGVPESA EKPVQMETDS KAEAPKKKVK KTNVPLSELV YGALKTVEVE
601: KAVEKEFEMA LQDRVMEETK DRKNAVESYV YDMRNKLSDK YQEYITDSER EAFLANLQEV EDWLYEDGED ETKGVYVAKL EELKKVGDPV EVRYKESLER
701: GSVIDQLGYC INSYREAAMS TDPKFDHIEL AEKQKVLNEC VEAEAWLRGK QQQQDTLPKY ATPALLSADV KSKAEALDKF CRPIMTKPKP VAKAEAPQAK
801: GGEQADEGKS EPEQPASAEP METENPAEGS T

Arabidopsis Description

HSP70-14Heat shock 70 kDa protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7C0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.